miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23551 5' -45 NC_005260.1 + 145693 0.66 1
Target:  5'- cUCGGCGUGA--ACAGUAAa---UCCa -3'
miRNA:   3'- uGGCUGCACUaaUGUCAUUgcaaAGG- -5'
23551 5' -45 NC_005260.1 + 200553 0.67 1
Target:  5'- uGCCGguGCG-GAUUGCAGUcucGCGg--CCg -3'
miRNA:   3'- -UGGC--UGCaCUAAUGUCAu--UGCaaaGG- -5'
23551 5' -45 NC_005260.1 + 15039 0.66 1
Target:  5'- cACgGACGUGuaguaaACAGUGaauaccguuuGCGUUUCg -3'
miRNA:   3'- -UGgCUGCACuaa---UGUCAU----------UGCAAAGg -5'
23551 5' -45 NC_005260.1 + 72683 0.66 1
Target:  5'- uUUGAUGUGAcucauuaUACAGUAACGag-CCa -3'
miRNA:   3'- uGGCUGCACUa------AUGUCAUUGCaaaGG- -5'
23551 5' -45 NC_005260.1 + 85508 0.68 0.999997
Target:  5'- uUUGugGUGAUUGCAaGUGGaaaucugguguuaaGUUUCCg -3'
miRNA:   3'- uGGCugCACUAAUGU-CAUUg-------------CAAAGG- -5'
23551 5' -45 NC_005260.1 + 209023 0.68 0.999997
Target:  5'- uGCCGACgGUGGUUACuGGaGACGUcagaaauauuacUUCUa -3'
miRNA:   3'- -UGGCUG-CACUAAUG-UCaUUGCA------------AAGG- -5'
23551 5' -45 NC_005260.1 + 103011 0.69 0.999987
Target:  5'- aACCGGCGgcGAUUGuCAccGUuAUGUUUCCa -3'
miRNA:   3'- -UGGCUGCa-CUAAU-GU--CAuUGCAAAGG- -5'
23551 5' -45 NC_005260.1 + 142862 0.69 0.999987
Target:  5'- gGCCGuCGUGccaUACGGUAuacagagUGUUUCCg -3'
miRNA:   3'- -UGGCuGCACua-AUGUCAUu------GCAAAGG- -5'
23551 5' -45 NC_005260.1 + 8766 0.7 0.999975
Target:  5'- uAUCGG-GUGAUUGCGGUGGCGaugCUa -3'
miRNA:   3'- -UGGCUgCACUAAUGUCAUUGCaaaGG- -5'
23551 5' -45 NC_005260.1 + 81809 0.7 0.999955
Target:  5'- uACCGACGUaacuGAaUACGGUAugGguaucgcucUUCCu -3'
miRNA:   3'- -UGGCUGCA----CUaAUGUCAUugCa--------AAGG- -5'
23551 5' -45 NC_005260.1 + 136499 0.71 0.999866
Target:  5'- uGCCGACGg---UGgAaUAACGUUUCCa -3'
miRNA:   3'- -UGGCUGCacuaAUgUcAUUGCAAAGG- -5'
23551 5' -45 NC_005260.1 + 102049 0.75 0.995742
Target:  5'- gACCGACGUGGcaaUGCAGU-GUGUUUCUg -3'
miRNA:   3'- -UGGCUGCACUa--AUGUCAuUGCAAAGG- -5'
23551 5' -45 NC_005260.1 + 150288 0.77 0.981181
Target:  5'- uCCGACGaa--UACAGUGGCGUUUUCa -3'
miRNA:   3'- uGGCUGCacuaAUGUCAUUGCAAAGG- -5'
23551 5' -45 NC_005260.1 + 210107 1.14 0.033239
Target:  5'- uACCGACGUGAUUACAGUAACGUUUCCu -3'
miRNA:   3'- -UGGCUGCACUAAUGUCAUUGCAAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.