miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23553 5' -50.7 NC_005260.1 + 222215 1.12 0.008697
Target:  5'- uGUUAACCCAACGCUGGCAAUCACGGCu -3'
miRNA:   3'- -CAAUUGGGUUGCGACCGUUAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 152849 0.66 0.998056
Target:  5'- aGUguuCCCAAC--UGGCcuaGAUUACGGCa -3'
miRNA:   3'- -CAauuGGGUUGcgACCG---UUAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 137974 0.67 0.995514
Target:  5'- --cAACCCAAgacauucCGCUGGUAAUacugguggUGCGGUa -3'
miRNA:   3'- caaUUGGGUU-------GCGACCGUUA--------GUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 54029 0.67 0.994863
Target:  5'- cUUGACCCuuagcaguUGCUucGGUAGUCuguGCGGCa -3'
miRNA:   3'- cAAUUGGGuu------GCGA--CCGUUAG---UGCCG- -5'
23553 5' -50.7 NC_005260.1 + 158681 0.69 0.98679
Target:  5'- --aGAgCCAACaucgGC-GGUGAUCACGGCu -3'
miRNA:   3'- caaUUgGGUUG----CGaCCGUUAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 174357 0.7 0.968342
Target:  5'- -cUAACCCAACG--GGUGAUCGucCGGCu -3'
miRNA:   3'- caAUUGGGUUGCgaCCGUUAGU--GCCG- -5'
23553 5' -50.7 NC_005260.1 + 227095 0.71 0.961741
Target:  5'- -aUAGCCUAcuucGCGCagGGUAAUguCGGCa -3'
miRNA:   3'- caAUUGGGU----UGCGa-CCGUUAguGCCG- -5'
23553 5' -50.7 NC_005260.1 + 136646 0.71 0.950143
Target:  5'- -aUAACCCAGCuGC-GGUAgaaguuuaccGUCGCGGUa -3'
miRNA:   3'- caAUUGGGUUG-CGaCCGU----------UAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 25201 0.72 0.936411
Target:  5'- --aGACCgAAUGCUGGCAcAUUaccaaccaACGGCa -3'
miRNA:   3'- caaUUGGgUUGCGACCGU-UAG--------UGCCG- -5'
23553 5' -50.7 NC_005260.1 + 37269 0.67 0.997263
Target:  5'- gGUUAuCUCGguGCGcCUGGUucucgcgcauuuAAUCGCGGCa -3'
miRNA:   3'- -CAAUuGGGU--UGC-GACCG------------UUAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 73586 0.67 0.995582
Target:  5'- ---cGCCC-ACGCUGGCAugcaAUCAUucGCg -3'
miRNA:   3'- caauUGGGuUGCGACCGU----UAGUGc-CG- -5'
23553 5' -50.7 NC_005260.1 + 203753 0.67 0.994939
Target:  5'- -gUAGCCCAGaucaccggauacaaaGCUGGCAuUCuuacCGGUa -3'
miRNA:   3'- caAUUGGGUUg--------------CGACCGUuAGu---GCCG- -5'
23553 5' -50.7 NC_005260.1 + 222454 0.68 0.989723
Target:  5'- gGUUAACaCCGcCGgUGGUAGUCAaUGGUg -3'
miRNA:   3'- -CAAUUG-GGUuGCgACCGUUAGU-GCCG- -5'
23553 5' -50.7 NC_005260.1 + 47628 0.69 0.985101
Target:  5'- -aUggUCCGcaaGCUGGCcguGUCGCGGUu -3'
miRNA:   3'- caAuuGGGUug-CGACCGu--UAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 77874 0.7 0.976661
Target:  5'- aGUUGACUCAAUcaaauCUGGCAA-CAUGGUa -3'
miRNA:   3'- -CAAUUGGGUUGc----GACCGUUaGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 193781 0.7 0.97409
Target:  5'- ---uGCUCcGCGUUGGCAugaaagAUUACGGCu -3'
miRNA:   3'- caauUGGGuUGCGACCGU------UAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 93926 0.71 0.945807
Target:  5'- --aGugCCGGCGCUGGCAAgacuagCAaaGCa -3'
miRNA:   3'- caaUugGGUUGCGACCGUUa-----GUgcCG- -5'
23553 5' -50.7 NC_005260.1 + 51592 0.71 0.945807
Target:  5'- ---uGCCCAGCGuCUGGUAG--ACGGUa -3'
miRNA:   3'- caauUGGGUUGC-GACCGUUagUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 15627 0.74 0.874837
Target:  5'- uUUGGCCCAACGCUauacaagcauaGCAAUaACGGCg -3'
miRNA:   3'- cAAUUGGGUUGCGAc----------CGUUAgUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 49266 0.66 0.99888
Target:  5'- -aUAACCCAGauCGC-GGauacaCAAUCAcCGGCa -3'
miRNA:   3'- caAUUGGGUU--GCGaCC-----GUUAGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.