miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23553 5' -50.7 NC_005260.1 + 136646 0.71 0.950143
Target:  5'- -aUAACCCAGCuGC-GGUAgaaguuuaccGUCGCGGUa -3'
miRNA:   3'- caAUUGGGUUG-CGaCCGU----------UAGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 51592 0.71 0.945807
Target:  5'- ---uGCCCAGCGuCUGGUAG--ACGGUa -3'
miRNA:   3'- caauUGGGUUGC-GACCGUUagUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 93926 0.71 0.945807
Target:  5'- --aGugCCGGCGCUGGCAAgacuagCAaaGCa -3'
miRNA:   3'- caaUugGGUUGCGACCGUUa-----GUgcCG- -5'
23553 5' -50.7 NC_005260.1 + 25201 0.72 0.936411
Target:  5'- --aGACCgAAUGCUGGCAcAUUaccaaccaACGGCa -3'
miRNA:   3'- caaUUGGgUUGCGACCGU-UAG--------UGCCG- -5'
23553 5' -50.7 NC_005260.1 + 15627 0.74 0.874837
Target:  5'- uUUGGCCCAACGCUauacaagcauaGCAAUaACGGCg -3'
miRNA:   3'- cAAUUGGGUUGCGAc----------CGUUAgUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 87269 0.75 0.818373
Target:  5'- --cAACUauuACGCUGGUAAaCACGGCa -3'
miRNA:   3'- caaUUGGgu-UGCGACCGUUaGUGCCG- -5'
23553 5' -50.7 NC_005260.1 + 222215 1.12 0.008697
Target:  5'- uGUUAACCCAACGCUGGCAAUCACGGCu -3'
miRNA:   3'- -CAAUUGGGUUGCGACCGUUAGUGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.