Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23553 | 5' | -50.7 | NC_005260.1 | + | 136646 | 0.71 | 0.950143 |
Target: 5'- -aUAACCCAGCuGC-GGUAgaaguuuaccGUCGCGGUa -3' miRNA: 3'- caAUUGGGUUG-CGaCCGU----------UAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 51592 | 0.71 | 0.945807 |
Target: 5'- ---uGCCCAGCGuCUGGUAG--ACGGUa -3' miRNA: 3'- caauUGGGUUGC-GACCGUUagUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 93926 | 0.71 | 0.945807 |
Target: 5'- --aGugCCGGCGCUGGCAAgacuagCAaaGCa -3' miRNA: 3'- caaUugGGUUGCGACCGUUa-----GUgcCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 25201 | 0.72 | 0.936411 |
Target: 5'- --aGACCgAAUGCUGGCAcAUUaccaaccaACGGCa -3' miRNA: 3'- caaUUGGgUUGCGACCGU-UAG--------UGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 15627 | 0.74 | 0.874837 |
Target: 5'- uUUGGCCCAACGCUauacaagcauaGCAAUaACGGCg -3' miRNA: 3'- cAAUUGGGUUGCGAc----------CGUUAgUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 87269 | 0.75 | 0.818373 |
Target: 5'- --cAACUauuACGCUGGUAAaCACGGCa -3' miRNA: 3'- caaUUGGgu-UGCGACCGUUaGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 222215 | 1.12 | 0.008697 |
Target: 5'- uGUUAACCCAACGCUGGCAAUCACGGCu -3' miRNA: 3'- -CAAUUGGGUUGCGACCGUUAGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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