Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23554 | 3' | -46.5 | NC_005260.1 | + | 228096 | 1.04 | 0.051628 |
Target: 5'- gUUACAAGCGACAAUCACUAUGCCAAAc -3' miRNA: 3'- -AAUGUUCGCUGUUAGUGAUACGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 229546 | 0.68 | 0.999511 |
Target: 5'- -aGCAAGCGGCAuccAUCGCa--GCCAu- -3' miRNA: 3'- aaUGUUCGCUGU---UAGUGauaCGGUuu -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 148341 | 0.67 | 0.999917 |
Target: 5'- -aGCGAGuUGACuAUCACgAUGCCAc- -3' miRNA: 3'- aaUGUUC-GCUGuUAGUGaUACGGUuu -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 116243 | 0.66 | 0.999954 |
Target: 5'- -aACGAGCGGCAGUauCUuUGCCGc- -3' miRNA: 3'- aaUGUUCGCUGUUAguGAuACGGUuu -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 176979 | 0.66 | 0.999982 |
Target: 5'- -----cGCGGCAAUCGCUuucaaaAUGUCGAAu -3' miRNA: 3'- aauguuCGCUGUUAGUGA------UACGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 10905 | 0.66 | 0.999982 |
Target: 5'- uUUACGAGCGccACGAUCAUUccacUGUCGAGu -3' miRNA: 3'- -AAUGUUCGC--UGUUAGUGAu---ACGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 98565 | 0.69 | 0.999388 |
Target: 5'- aUUACAAGCGACugcaaGCUGaauucgGCCAAAu -3' miRNA: 3'- -AAUGUUCGCUGuuag-UGAUa-----CGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 178133 | 0.69 | 0.99906 |
Target: 5'- aUACAcucugccgaacGGCGGCAAauuCUAUGCCAAGa -3' miRNA: 3'- aAUGU-----------UCGCUGUUaguGAUACGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 30329 | 0.7 | 0.997043 |
Target: 5'- -aGCGGGCGACAaacucGUUAUUAUGCgAAAc -3' miRNA: 3'- aaUGUUCGCUGU-----UAGUGAUACGgUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 98211 | 0.72 | 0.988302 |
Target: 5'- -aGCAAGCGAUAGUCGCacAUGCgAAc -3' miRNA: 3'- aaUGUUCGCUGUUAGUGa-UACGgUUu -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 201562 | 0.73 | 0.978292 |
Target: 5'- -aGCGAGCGACuGAUCuacgcaUGUGCCGAAa -3' miRNA: 3'- aaUGUUCGCUG-UUAGug----AUACGGUUU- -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 228389 | 0.8 | 0.780057 |
Target: 5'- --uCGAGUGGCAAUCAUUGUGCCGu- -3' miRNA: 3'- aauGUUCGCUGUUAGUGAUACGGUuu -5' |
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23554 | 3' | -46.5 | NC_005260.1 | + | 126755 | 0.66 | 0.999987 |
Target: 5'- --gUAAGCGGCAGUCcaguCUucacGUGCCAu- -3' miRNA: 3'- aauGUUCGCUGUUAGu---GA----UACGGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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