Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23554 | 5' | -52.2 | NC_005260.1 | + | 20373 | 0.68 | 0.978555 |
Target: 5'- uGUCCgacuuGCGGCACA--GAUUGCucuaauCACUCGc -3' miRNA: 3'- -UAGG-----UGCCGUGUuaCUAACG------GUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 44939 | 0.66 | 0.994668 |
Target: 5'- aGUCCACGGCGaauAUGAUcGCgauugaucuuaCAUUCGa -3' miRNA: 3'- -UAGGUGCCGUgu-UACUAaCG-----------GUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 71440 | 0.69 | 0.964514 |
Target: 5'- --aCGCGGauuaGCAAUGug-GCCACUCa -3' miRNA: 3'- uagGUGCCg---UGUUACuaaCGGUGAGc -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 116518 | 0.7 | 0.939955 |
Target: 5'- uAUUCACGGUaaaaaacgaagcgGCAAaGAUacUGCCGCUCGu -3' miRNA: 3'- -UAGGUGCCG-------------UGUUaCUA--ACGGUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 130541 | 0.71 | 0.90772 |
Target: 5'- uUCCgACGGCACGAUGAUUGUguUUg- -3' miRNA: 3'- uAGG-UGCCGUGUUACUAACGguGAgc -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 188657 | 0.66 | 0.994589 |
Target: 5'- -gCCGCGGCAauugGAUaauuucuUGCUACUUGa -3' miRNA: 3'- uaGGUGCCGUguuaCUA-------ACGGUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 217975 | 0.68 | 0.967422 |
Target: 5'- -gCCAaugcauuCGGCGCAAUcAUUGCgGCUCGu -3' miRNA: 3'- uaGGU-------GCCGUGUUAcUAACGgUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 228130 | 1.08 | 0.010752 |
Target: 5'- aAUCCACGGCACAAUGAUUGCCACUCGa -3' miRNA: 3'- -UAGGUGCCGUGUUACUAACGGUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 228353 | 0.71 | 0.90772 |
Target: 5'- ----uUGGCAUAGUGAUUGUCGCUUGu -3' miRNA: 3'- uagguGCCGUGUUACUAACGGUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 228457 | 0.67 | 0.982827 |
Target: 5'- aGUUCGCGGagcugcugaaAUAAUGcugcUUGCCACUCGa -3' miRNA: 3'- -UAGGUGCCg---------UGUUACu---AACGGUGAGC- -5' |
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23554 | 5' | -52.2 | NC_005260.1 | + | 229814 | 0.71 | 0.90772 |
Target: 5'- -aUCACGGCgaaauggcuGCGAUGGaUGCCGCUUGc -3' miRNA: 3'- uaGGUGCCG---------UGUUACUaACGGUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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