Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 229537 | 0.95 | 0.045757 |
Target: 5'- gAAG-CAUCAAGCAAGCGGCAUCCAUCg -3' miRNA: 3'- -UUCgGUAGUUCGUUCGCCGUAGGUAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 174148 | 0.72 | 0.794813 |
Target: 5'- uGAGCCGaUGAuCAAGCGGCAaguUCCGUCu -3' miRNA: 3'- -UUCGGUaGUUcGUUCGCCGU---AGGUAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 9630 | 0.71 | 0.81295 |
Target: 5'- cAAGCuaaCAUCAAGCAAGuUGGCAUCgAUa -3' miRNA: 3'- -UUCG---GUAGUUCGUUC-GCCGUAGgUAg -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 28946 | 0.69 | 0.923199 |
Target: 5'- cGAGUgGUCAAGCAGuuacaUGGCGUCCAg- -3' miRNA: 3'- -UUCGgUAGUUCGUUc----GCCGUAGGUag -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 206016 | 0.68 | 0.93079 |
Target: 5'- gAAGUCAUCAGcagcGCGAGCguuagaacgcuucucGGCAcCCAUCa -3' miRNA: 3'- -UUCGGUAGUU----CGUUCG---------------CCGUaGGUAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 213502 | 0.68 | 0.938869 |
Target: 5'- uGGgCAUCA---GAGCaGGCAUCCGUCg -3' miRNA: 3'- uUCgGUAGUucgUUCG-CCGUAGGUAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 84770 | 0.67 | 0.95232 |
Target: 5'- uGGUCAUCAucGC-AGCGGCAUaagCCAUUu -3' miRNA: 3'- uUCGGUAGUu-CGuUCGCCGUA---GGUAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 115461 | 0.67 | 0.960087 |
Target: 5'- -uGCCugaguuUCAAGCAAGCGGUaagAUCgAUa -3' miRNA: 3'- uuCGGu-----AGUUCGUUCGCCG---UAGgUAg -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 125968 | 0.67 | 0.960087 |
Target: 5'- uGGCgGUCAAGCAggcAGCGGUAguUCUggCa -3' miRNA: 3'- uUCGgUAGUUCGU---UCGCCGU--AGGuaG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 98326 | 0.67 | 0.966935 |
Target: 5'- -cGCgAUCAAGCAAGCGuuuCGUCUuggAUCa -3' miRNA: 3'- uuCGgUAGUUCGUUCGCc--GUAGG---UAG- -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 57416 | 0.66 | 0.980344 |
Target: 5'- gAAGgUAUCAAGUucGAGCGGUA-CCGUg -3' miRNA: 3'- -UUCgGUAGUUCG--UUCGCCGUaGGUAg -5' |
|||||||
23555 | 5' | -53.3 | NC_005260.1 | + | 118353 | 0.66 | 0.982447 |
Target: 5'- uGGUCAaauGGCAAGCGGUAUCgaAUCc -3' miRNA: 3'- uUCGGUaguUCGUUCGCCGUAGg-UAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home