miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23556 5' -44.3 NC_005260.1 + 217312 0.66 1
Target:  5'- ---cGCUUAAcccCACcCGGGccGUCGCUCa -3'
miRNA:   3'- auaaCGAAUUa--GUGuGUCU--UAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 123449 0.66 1
Target:  5'- ---cGCUUAAUUGCGCGuuauauuguuGAGUUGCUUu -3'
miRNA:   3'- auaaCGAAUUAGUGUGU----------CUUAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 16671 0.66 1
Target:  5'- ---aGCUUGAUCaucacACGCAGAGaCGC-Cg -3'
miRNA:   3'- auaaCGAAUUAG-----UGUGUCUUaGCGaG- -5'
23556 5' -44.3 NC_005260.1 + 106575 0.66 1
Target:  5'- cUAUUGUUUAAUUugGCGGAAgCGaUCc -3'
miRNA:   3'- -AUAACGAAUUAGugUGUCUUaGCgAG- -5'
23556 5' -44.3 NC_005260.1 + 137150 0.66 1
Target:  5'- cGUUGUgacuuAUCuAgACGGAAUCGCUUc -3'
miRNA:   3'- aUAACGaau--UAG-UgUGUCUUAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 172934 0.66 1
Target:  5'- aAUUGUgc--UCGCGguGAAUcCGCUCa -3'
miRNA:   3'- aUAACGaauuAGUGUguCUUA-GCGAG- -5'
23556 5' -44.3 NC_005260.1 + 97466 0.67 0.999999
Target:  5'- -uUUGCUUGA-CugGuaaucCAGAGUCGCUa -3'
miRNA:   3'- auAACGAAUUaGugU-----GUCUUAGCGAg -5'
23556 5' -44.3 NC_005260.1 + 214904 0.67 0.999999
Target:  5'- aGUUGaacgacAUCACAUAGAuAUCGCUUa -3'
miRNA:   3'- aUAACgaau--UAGUGUGUCU-UAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 115751 0.68 0.999997
Target:  5'- --aUGUgauuAUCACACAGAuaguGUCGCg- -3'
miRNA:   3'- auaACGaau-UAGUGUGUCU----UAGCGag -5'
23556 5' -44.3 NC_005260.1 + 20355 0.68 0.999994
Target:  5'- gAUUGCUcUAAUCACucGCAuGAUCGCa- -3'
miRNA:   3'- aUAACGA-AUUAGUG--UGUcUUAGCGag -5'
23556 5' -44.3 NC_005260.1 + 63040 0.69 0.999956
Target:  5'- ---cGCgaAAUCGCACGGAGUCGa-- -3'
miRNA:   3'- auaaCGaaUUAGUGUGUCUUAGCgag -5'
23556 5' -44.3 NC_005260.1 + 220311 0.7 0.999941
Target:  5'- ---aGCUUGGU-GCACAGAAUacaaguuaCGCUCa -3'
miRNA:   3'- auaaCGAAUUAgUGUGUCUUA--------GCGAG- -5'
23556 5' -44.3 NC_005260.1 + 4361 0.71 0.999823
Target:  5'- ---cGCUUGAUCAU-CGGAAUCaGUUCa -3'
miRNA:   3'- auaaCGAAUUAGUGuGUCUUAG-CGAG- -5'
23556 5' -44.3 NC_005260.1 + 166227 0.71 0.999627
Target:  5'- gUAUUGCUUGAUUAUACAGcgaaacgcaaauGAUUGCa- -3'
miRNA:   3'- -AUAACGAAUUAGUGUGUC------------UUAGCGag -5'
23556 5' -44.3 NC_005260.1 + 145776 0.73 0.998332
Target:  5'- ---cGUUUGAUCgACACAGGAUUGUUUa -3'
miRNA:   3'- auaaCGAAUUAG-UGUGUCUUAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 230877 0.74 0.994383
Target:  5'- ---aGCU--AUCAUAUGGGAUCGCUCc -3'
miRNA:   3'- auaaCGAauUAGUGUGUCUUAGCGAG- -5'
23556 5' -44.3 NC_005260.1 + 230653 0.97 0.220055
Target:  5'- gUAUUGCUauAUCACACAGAAUCGCUCc -3'
miRNA:   3'- -AUAACGAauUAGUGUGUCUUAGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.