miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 135553 1.06 0.002034
Target:  5'- cAAGAACCUGCCCCUGCGCACCAAGGAc -3'
miRNA:   3'- -UUCUUGGACGGGGACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33730 0.82 0.094214
Target:  5'- uGGGGGCCUGCCCCUcGCGCggcGCCGGGGc -3'
miRNA:   3'- -UUCUUGGACGGGGA-CGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 12886 0.79 0.15144
Target:  5'- cGGAGCCUGCuggacgCCCUGCGCGCUgcGGAc -3'
miRNA:   3'- uUCUUGGACG------GGGACGCGUGGuuCCU- -5'
23557 5' -58.2 NC_005261.1 + 35769 0.77 0.216126
Target:  5'- gGAGGuCCgGCgCCUGCGCGCCGAGGc -3'
miRNA:   3'- -UUCUuGGaCGgGGACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 34430 0.77 0.210811
Target:  5'- -cGcGCCUGCCCCUGCugccgaacGCGCCGGGGc -3'
miRNA:   3'- uuCuUGGACGGGGACG--------CGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 131641 0.75 0.269257
Target:  5'- cGAGGACCgacggGCCCCccggGCGCACCGucugcgAGGGu -3'
miRNA:   3'- -UUCUUGGa----CGGGGa---CGCGUGGU------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 79364 0.75 0.27577
Target:  5'- -cGGACCUGCCCCaGCGCuuCCAcuacgacgugcGGGAg -3'
miRNA:   3'- uuCUUGGACGGGGaCGCGu-GGU-----------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 1780 0.73 0.371967
Target:  5'- uGGGGCUgccgcgUGCCCCUGCGaCGCCcgcGAGGGg -3'
miRNA:   3'- uUCUUGG------ACGGGGACGC-GUGG---UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 118523 0.73 0.344738
Target:  5'- cGAGGcgcCCUGCCCCgccgaccccugcgGCGCGCgCGAGGAc -3'
miRNA:   3'- -UUCUu--GGACGGGGa------------CGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 119846 0.73 0.383598
Target:  5'- cGGcAGCCUGCCCCugaccgUGCGCucccugaccgccgcaGCCGAGGGc -3'
miRNA:   3'- uUC-UUGGACGGGG------ACGCG---------------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 61887 0.72 0.405827
Target:  5'- uGGGcGCCUucucGCCCgUGCGCACCAccgAGGGc -3'
miRNA:   3'- -UUCuUGGA----CGGGgACGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 127394 0.72 0.405827
Target:  5'- gAGGAGCCcgGCgCCCU-CGCACaCGAGGAu -3'
miRNA:   3'- -UUCUUGGa-CG-GGGAcGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 23761 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128392 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128335 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23818 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128278 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23875 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 119088 0.71 0.469498
Target:  5'- -----gCUGgCCgUGCGCGCCGAGGAg -3'
miRNA:   3'- uucuugGACgGGgACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 19862 0.71 0.432459
Target:  5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3'
miRNA:   3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.