miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 133287 0.66 0.77114
Target:  5'- cGGcGCCcGCCUCgugGC-CGCCAAGGAc -3'
miRNA:   3'- uUCuUGGaCGGGGa--CGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 44281 0.67 0.712215
Target:  5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3'
miRNA:   3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 135553 1.06 0.002034
Target:  5'- cAAGAACCUGCCCCUGCGCACCAAGGAc -3'
miRNA:   3'- -UUCUUGGACGGGGACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 28717 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 33810 0.66 0.76158
Target:  5'- -cGGGCUUGUCUUUGgGCGgCCGGGGGg -3'
miRNA:   3'- uuCUUGGACGGGGACgCGU-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 36580 0.66 0.751904
Target:  5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3'
miRNA:   3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 90055 0.66 0.751904
Target:  5'- cGGAcaGCCagcggcGCCCCgcGgGCGCCGAGGGc -3'
miRNA:   3'- uUCU--UGGa-----CGGGGa-CgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 120189 0.66 0.742119
Target:  5'- ---cACCcGCCcaaCCUGCGCugCGAGGu -3'
miRNA:   3'- uucuUGGaCGG---GGACGCGugGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 79158 0.67 0.722265
Target:  5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3'
miRNA:   3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 120377 0.66 0.732237
Target:  5'- cGGcGCCgcGCCCUcGCGCACCGAGc- -3'
miRNA:   3'- uUCuUGGa-CGGGGaCGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 55260 0.66 0.742119
Target:  5'- cGAGGAggUCUGCgCCCccugGCGCGCCGgaggcGGGGg -3'
miRNA:   3'- -UUCUU--GGACG-GGGa---CGCGUGGU-----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 35693 0.66 0.77114
Target:  5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3'
miRNA:   3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 74646 0.66 0.732237
Target:  5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3'
miRNA:   3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 130310 0.66 0.76158
Target:  5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3'
miRNA:   3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 58769 0.66 0.742119
Target:  5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3'
miRNA:   3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 107356 0.66 0.732237
Target:  5'- -cGGACCUGCgUCgucgUGgGCGCCGGGGc -3'
miRNA:   3'- uuCUUGGACGgGG----ACgCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 29105 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 47255 0.66 0.76158
Target:  5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3'
miRNA:   3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 78059 0.66 0.751904
Target:  5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.