Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 133287 | 0.66 | 0.77114 |
Target: 5'- cGGcGCCcGCCUCgugGC-CGCCAAGGAc -3' miRNA: 3'- uUCuUGGaCGGGGa--CGcGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 44281 | 0.67 | 0.712215 |
Target: 5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3' miRNA: 3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 99512 | 0.67 | 0.671409 |
Target: 5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3' miRNA: 3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 135553 | 1.06 | 0.002034 |
Target: 5'- cAAGAACCUGCCCCUGCGCACCAAGGAc -3' miRNA: 3'- -UUCUUGGACGGGGACGCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 28717 | 0.66 | 0.76158 |
Target: 5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3' miRNA: 3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 33810 | 0.66 | 0.76158 |
Target: 5'- -cGGGCUUGUCUUUGgGCGgCCGGGGGg -3' miRNA: 3'- uuCUUGGACGGGGACgCGU-GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 36580 | 0.66 | 0.751904 |
Target: 5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3' miRNA: 3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 90055 | 0.66 | 0.751904 |
Target: 5'- cGGAcaGCCagcggcGCCCCgcGgGCGCCGAGGGc -3' miRNA: 3'- uUCU--UGGa-----CGGGGa-CgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 120189 | 0.66 | 0.742119 |
Target: 5'- ---cACCcGCCcaaCCUGCGCugCGAGGu -3' miRNA: 3'- uucuUGGaCGG---GGACGCGugGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 79158 | 0.67 | 0.722265 |
Target: 5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3' miRNA: 3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 120377 | 0.66 | 0.732237 |
Target: 5'- cGGcGCCgcGCCCUcGCGCACCGAGc- -3' miRNA: 3'- uUCuUGGa-CGGGGaCGCGUGGUUCcu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 55260 | 0.66 | 0.742119 |
Target: 5'- cGAGGAggUCUGCgCCCccugGCGCGCCGgaggcGGGGg -3' miRNA: 3'- -UUCUU--GGACG-GGGa---CGCGUGGU-----UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 35693 | 0.66 | 0.77114 |
Target: 5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3' miRNA: 3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 74646 | 0.66 | 0.732237 |
Target: 5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3' miRNA: 3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 130310 | 0.66 | 0.76158 |
Target: 5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3' miRNA: 3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58769 | 0.66 | 0.742119 |
Target: 5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3' miRNA: 3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 107356 | 0.66 | 0.732237 |
Target: 5'- -cGGACCUGCgUCgucgUGgGCGCCGGGGc -3' miRNA: 3'- uuCUUGGACGgGG----ACgCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 29105 | 0.67 | 0.712215 |
Target: 5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3' miRNA: 3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 47255 | 0.66 | 0.76158 |
Target: 5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3' miRNA: 3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78059 | 0.66 | 0.751904 |
Target: 5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3' miRNA: 3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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