Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 137972 | 0.66 | 0.755363 |
Target: 5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3' miRNA: 3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 137936 | 0.66 | 0.755363 |
Target: 5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3' miRNA: 3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 137897 | 0.7 | 0.561985 |
Target: 5'- gGCUGCGGGCcgccGCAGCC-GCcGCC-GCAg -3' miRNA: 3'- gUGAUGCUCG----UGUCGGaCG-CGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 136170 | 0.66 | 0.774487 |
Target: 5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3' miRNA: 3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134550 | 0.75 | 0.285293 |
Target: 5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3' miRNA: 3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134505 | 1.08 | 0.001611 |
Target: 5'- gCACUACGAGCACAGCCUGCGCCUGCAg -3' miRNA: 3'- -GUGAUGCUCGUGUCGGACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134197 | 0.71 | 0.463813 |
Target: 5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3' miRNA: 3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134060 | 0.71 | 0.463813 |
Target: 5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3' miRNA: 3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 133649 | 0.66 | 0.774487 |
Target: 5'- cCGCUgcGCGAGCGCuGCgUGCucGCCUccgGCGc -3' miRNA: 3'- -GUGA--UGCUCGUGuCGgACG--CGGA---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 133393 | 0.71 | 0.492416 |
Target: 5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3' miRNA: 3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 132859 | 0.94 | 0.016019 |
Target: 5'- aCGC-ACGGGCACAGCCUGCGCCUGCc -3' miRNA: 3'- -GUGaUGCUCGUGUCGGACGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 131187 | 0.66 | 0.793091 |
Target: 5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3' miRNA: 3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 127788 | 0.67 | 0.725869 |
Target: 5'- uGCU-CGAGCGgcgGGCCgGCGCCgcgGCGg -3' miRNA: 3'- gUGAuGCUCGUg--UCGGaCGCGGa--CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 127707 | 0.67 | 0.735795 |
Target: 5'- gACaGCGAGCGC-GCCgcgGgGCCcGCAg -3' miRNA: 3'- gUGaUGCUCGUGuCGGa--CgCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126618 | 0.71 | 0.502131 |
Target: 5'- cCGCUcuucccGCGcGCGCAGCUcugccagaaaaUGCGCCUGUAc -3' miRNA: 3'- -GUGA------UGCuCGUGUCGG-----------ACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126342 | 0.68 | 0.630838 |
Target: 5'- cCGCUGCGgccaagcauAGUACAGCgaaacgaacacgccCUGCGCCUGg- -3' miRNA: 3'- -GUGAUGC---------UCGUGUCG--------------GACGCGGACgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126244 | 0.67 | 0.71586 |
Target: 5'- uGCUuCGAGCcgaucgacacGCGGCugCUGCGCCUGgAg -3' miRNA: 3'- gUGAuGCUCG----------UGUCG--GACGCGGACgU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126060 | 0.66 | 0.783859 |
Target: 5'- gGCgGCG-GCGCuGGCCUGUgcggggcuugggGCCUGCGc -3' miRNA: 3'- gUGaUGCuCGUG-UCGGACG------------CGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 125792 | 0.66 | 0.774487 |
Target: 5'- cCGCUGCGAaCGgGGCUUGgGCCgggGCc -3' miRNA: 3'- -GUGAUGCUcGUgUCGGACgCGGa--CGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 123429 | 0.76 | 0.241115 |
Target: 5'- cCGCggACGuGCGCAGCCUGCGggagcggcaCCUGCGc -3' miRNA: 3'- -GUGa-UGCuCGUGUCGGACGC---------GGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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