miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 137972 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 137936 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 137897 0.7 0.561985
Target:  5'- gGCUGCGGGCcgccGCAGCC-GCcGCC-GCAg -3'
miRNA:   3'- gUGAUGCUCG----UGUCGGaCG-CGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 136170 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 134550 0.75 0.285293
Target:  5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3'
miRNA:   3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 134505 1.08 0.001611
Target:  5'- gCACUACGAGCACAGCCUGCGCCUGCAg -3'
miRNA:   3'- -GUGAUGCUCGUGUCGGACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 134197 0.71 0.463813
Target:  5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3'
miRNA:   3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5'
23558 3' -57.9 NC_005261.1 + 134060 0.71 0.463813
Target:  5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3'
miRNA:   3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 133649 0.66 0.774487
Target:  5'- cCGCUgcGCGAGCGCuGCgUGCucGCCUccgGCGc -3'
miRNA:   3'- -GUGA--UGCUCGUGuCGgACG--CGGA---CGU- -5'
23558 3' -57.9 NC_005261.1 + 133393 0.71 0.492416
Target:  5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3'
miRNA:   3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 132859 0.94 0.016019
Target:  5'- aCGC-ACGGGCACAGCCUGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCUCGUGUCGGACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 131187 0.66 0.793091
Target:  5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3'
miRNA:   3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 127788 0.67 0.725869
Target:  5'- uGCU-CGAGCGgcgGGCCgGCGCCgcgGCGg -3'
miRNA:   3'- gUGAuGCUCGUg--UCGGaCGCGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 127707 0.67 0.735795
Target:  5'- gACaGCGAGCGC-GCCgcgGgGCCcGCAg -3'
miRNA:   3'- gUGaUGCUCGUGuCGGa--CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 126618 0.71 0.502131
Target:  5'- cCGCUcuucccGCGcGCGCAGCUcugccagaaaaUGCGCCUGUAc -3'
miRNA:   3'- -GUGA------UGCuCGUGUCGG-----------ACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 126342 0.68 0.630838
Target:  5'- cCGCUGCGgccaagcauAGUACAGCgaaacgaacacgccCUGCGCCUGg- -3'
miRNA:   3'- -GUGAUGC---------UCGUGUCG--------------GACGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 126244 0.67 0.71586
Target:  5'- uGCUuCGAGCcgaucgacacGCGGCugCUGCGCCUGgAg -3'
miRNA:   3'- gUGAuGCUCG----------UGUCG--GACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 126060 0.66 0.783859
Target:  5'- gGCgGCG-GCGCuGGCCUGUgcggggcuugggGCCUGCGc -3'
miRNA:   3'- gUGaUGCuCGUG-UCGGACG------------CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 125792 0.66 0.774487
Target:  5'- cCGCUGCGAaCGgGGCUUGgGCCgggGCc -3'
miRNA:   3'- -GUGAUGCUcGUgUCGGACgCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 123429 0.76 0.241115
Target:  5'- cCGCggACGuGCGCAGCCUGCGggagcggcaCCUGCGc -3'
miRNA:   3'- -GUGa-UGCuCGUGUCGGACGC---------GGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.