miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 9408 0.68 0.675188
Target:  5'- cCGC-GCGAGCGuCAGCCgcaGCGCgaGCc -3'
miRNA:   3'- -GUGaUGCUCGU-GUCGGa--CGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 10139 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5'
23558 3' -57.9 NC_005261.1 + 10414 0.67 0.725869
Target:  5'- gGCcGCGAGCGCGagcggcccgccGCCgcgGCGCCgGCc -3'
miRNA:   3'- gUGaUGCUCGUGU-----------CGGa--CGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 10517 0.66 0.754394
Target:  5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3'
miRNA:   3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 11050 0.68 0.654601
Target:  5'- gCACU-CGGGCGCcGCCcagGCGCCgccaGCGc -3'
miRNA:   3'- -GUGAuGCUCGUGuCGGa--CGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 11710 0.66 0.783859
Target:  5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 11819 0.66 0.755363
Target:  5'- gGCgACGGcGCGCgaAGUCUcuugGCGCCUGCAc -3'
miRNA:   3'- gUGaUGCU-CGUG--UCGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 11906 0.68 0.675188
Target:  5'- cCGCcGCGGGCcCGGCCcggccgGCGgCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGuGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 12334 0.68 0.654601
Target:  5'- gCGCUugGccGGCGCGGCC-GCcGCCgcgGCGg -3'
miRNA:   3'- -GUGAugC--UCGUGUCGGaCG-CGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 13846 0.69 0.602956
Target:  5'- gGCUGgGGGUggGgGGCCUGUGCCgaGCAg -3'
miRNA:   3'- gUGAUgCUCG--UgUCGGACGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 13972 0.68 0.664908
Target:  5'- gCGC-GCGGGCGgcGCCgcgcgGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCUCGUguCGGa----CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 14976 0.66 0.774487
Target:  5'- ---gGCGAcuGCGCGGCC-GCGCCgGCc -3'
miRNA:   3'- gugaUGCU--CGUGUCGGaCGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 14978 0.7 0.521805
Target:  5'- uCACgggcgAUGGGCGgGGCCcGCGCCUGg- -3'
miRNA:   3'- -GUGa----UGCUCGUgUCGGaCGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 15498 0.73 0.359089
Target:  5'- uCGCUGCGGGCGgGGCgUGUGUCgGCGu -3'
miRNA:   3'- -GUGAUGCUCGUgUCGgACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 15656 0.69 0.623602
Target:  5'- cCGCUGCG-GCGgAGCUgcgcaGCGCCUuGCGu -3'
miRNA:   3'- -GUGAUGCuCGUgUCGGa----CGCGGA-CGU- -5'
23558 3' -57.9 NC_005261.1 + 15905 0.68 0.654601
Target:  5'- -uCUGCGAGCGCcaccugaccgccGGCCcggGCgucGCCUGCGg -3'
miRNA:   3'- guGAUGCUCGUG------------UCGGa--CG---CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 16840 0.71 0.463813
Target:  5'- gCACU-CGGGCAgGcGCCgccgccgcgggGCGCCUGCAg -3'
miRNA:   3'- -GUGAuGCUCGUgU-CGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 19377 0.66 0.793091
Target:  5'- gGCcGCGGGCGCGccGCCcuccGCGCC-GCAg -3'
miRNA:   3'- gUGaUGCUCGUGU--CGGa---CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 19670 0.66 0.755363
Target:  5'- cCGCgcgcGCGGGCACGGCgUccucgcgcGCGCC-GCAg -3'
miRNA:   3'- -GUGa---UGCUCGUGUCGgA--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 19811 0.67 0.705778
Target:  5'- cCGCggcgGCGAcagccaGCGCGGCUgcgGCGCCcGCGg -3'
miRNA:   3'- -GUGa---UGCU------CGUGUCGGa--CGCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.