miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 59988 0.66 0.774487
Target:  5'- cCGC--CGGGuCGCAcGCCUGCGgCUGCu -3'
miRNA:   3'- -GUGauGCUC-GUGU-CGGACGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 121646 0.66 0.774487
Target:  5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3'
miRNA:   3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 56810 0.66 0.774487
Target:  5'- gGCcgACGA-CGCcGCCUGUGCCUGgGg -3'
miRNA:   3'- gUGa-UGCUcGUGuCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 41861 0.66 0.764985
Target:  5'- --aUGCGAucGCGCGGCC-GCGCCagGCc -3'
miRNA:   3'- gugAUGCU--CGUGUCGGaCGCGGa-CGu -5'
23558 3' -57.9 NC_005261.1 + 60546 0.66 0.764985
Target:  5'- gGCcguCGuAGCcCGGCCcguccgcgcccUGCGCCUGCAg -3'
miRNA:   3'- gUGau-GC-UCGuGUCGG-----------ACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 39205 0.66 0.764985
Target:  5'- uGCUGUGGGCGCGcGCCgccGCGCCgccGCu -3'
miRNA:   3'- gUGAUGCUCGUGU-CGGa--CGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 68525 0.66 0.764985
Target:  5'- -cCUGCcGGCGCcGCCgGCGCCcGCGc -3'
miRNA:   3'- guGAUGcUCGUGuCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 81188 0.66 0.764985
Target:  5'- gUACUcgGGGCACGGCCgcgcggGCGCgaGCc -3'
miRNA:   3'- -GUGAugCUCGUGUCGGa-----CGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 137972 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 71234 0.66 0.755363
Target:  5'- aCGCggcccucgGCG-GCGCAGCCgagccccGCGCCgaGCAg -3'
miRNA:   3'- -GUGa-------UGCuCGUGUCGGa------CGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 137936 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 50741 0.66 0.755363
Target:  5'- -cCUGCGcgccAGCACGGCCgcgccgaaccUgacgcGCGCCUGCGa -3'
miRNA:   3'- guGAUGC----UCGUGUCGG----------A-----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 114657 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5'
23558 3' -57.9 NC_005261.1 + 104818 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 88091 0.66 0.755363
Target:  5'- aCGCgACGGccaacGCACAGCUUGUGgaCCUGCu -3'
miRNA:   3'- -GUGaUGCU-----CGUGUCGGACGC--GGACGu -5'
23558 3' -57.9 NC_005261.1 + 69702 0.66 0.755363
Target:  5'- gCGC-GCGGGCGcCGGCg-GCGCCgGCAg -3'
miRNA:   3'- -GUGaUGCUCGU-GUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 11819 0.66 0.755363
Target:  5'- gGCgACGGcGCGCgaAGUCUcuugGCGCCUGCAc -3'
miRNA:   3'- gUGaUGCU-CGUG--UCGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 31439 0.66 0.755363
Target:  5'- gCGCUgguGCGGGCGCAGacgGCGCUgGCGc -3'
miRNA:   3'- -GUGA---UGCUCGUGUCggaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 19670 0.66 0.755363
Target:  5'- cCGCgcgcGCGGGCACGGCgUccucgcgcGCGCC-GCAg -3'
miRNA:   3'- -GUGa---UGCUCGUGUCGgA--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 10139 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.