miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 70944 0.66 0.722631
Target:  5'- gCGCGCGGcgGCGggggGGCUGCUgCUggccggGCUGg -3'
miRNA:   3'- -GCGCGUC--UGCa---CUGGCGGgGAa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 31450 0.66 0.75147
Target:  5'- gGCGCAGACGgcgcuggcgcUGGCCGCCg---GCa- -3'
miRNA:   3'- gCGCGUCUGC----------ACUGGCGGggaaCGac -5'
23558 5' -59.5 NC_005261.1 + 118020 0.66 0.760891
Target:  5'- gGCaGCGGGCGcggggccuuUGGCgGCCCCgcuucgccUGCUGc -3'
miRNA:   3'- gCG-CGUCUGC---------ACUGgCGGGGa-------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 53654 0.66 0.722631
Target:  5'- gGCGCAGACGgccgucuacggGGCCguGCUCCaggcGCUGg -3'
miRNA:   3'- gCGCGUCUGCa----------CUGG--CGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 7033 0.66 0.75147
Target:  5'- gCGCGCcGGCGgcGACCGCgCCgcggGCg- -3'
miRNA:   3'- -GCGCGuCUGCa-CUGGCGgGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 17564 0.66 0.75147
Target:  5'- gCGCGCgagaucacAGGCGcGcCCGCgCCUUGCg- -3'
miRNA:   3'- -GCGCG--------UCUGCaCuGGCGgGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 7905 0.66 0.722631
Target:  5'- aGCGCGGcCG-GGCCGUCCauggcGCUGc -3'
miRNA:   3'- gCGCGUCuGCaCUGGCGGGgaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 12582 0.66 0.732331
Target:  5'- aCGCGCugcuGGgG-GACCGCCUCaaccagcUGCUGg -3'
miRNA:   3'- -GCGCGu---CUgCaCUGGCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 13758 0.66 0.75147
Target:  5'- gGCgGCAuGuACGUGGgCGCCCCUgaggGCa- -3'
miRNA:   3'- gCG-CGU-C-UGCACUgGCGGGGAa---CGac -5'
23558 5' -59.5 NC_005261.1 + 115482 0.66 0.745767
Target:  5'- aCGCGUGGGcCGccGCCGCCCCgcgcccgacuggcGCUGg -3'
miRNA:   3'- -GCGCGUCU-GCacUGGCGGGGaa-----------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 29013 0.66 0.722631
Target:  5'- gCGCGCGG-CGUG-CCGCgCCUacgagcgccUGCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGgGGA---------ACGac -5'
23558 5' -59.5 NC_005261.1 + 11266 0.66 0.732331
Target:  5'- cCGCGCGGuucGCGcuGCCGCCCCc-GCg- -3'
miRNA:   3'- -GCGCGUC---UGCacUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 44753 0.66 0.741947
Target:  5'- uCGcCGCGGGCGacGCgCGCCCCggcaccgcGCUGg -3'
miRNA:   3'- -GC-GCGUCUGCacUG-GCGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 90829 0.66 0.732331
Target:  5'- cCGCGUgugcacgggGGGCGgcGCCGCCCCgacgGUUGu -3'
miRNA:   3'- -GCGCG---------UCUGCacUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 83244 0.66 0.712856
Target:  5'- gGcCGCcGGCGUGGCCGUaaagaCCUUUGCg- -3'
miRNA:   3'- gC-GCGuCUGCACUGGCG-----GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 52687 0.66 0.741947
Target:  5'- gCGcCGCAGACGgaGCCGCCCgCgcGCg- -3'
miRNA:   3'- -GC-GCGUCUGCacUGGCGGG-GaaCGac -5'
23558 5' -59.5 NC_005261.1 + 36941 0.66 0.75147
Target:  5'- gCGCGCAucGACGaccgcgGGCCcauggaGCCCUUUGCg- -3'
miRNA:   3'- -GCGCGU--CUGCa-----CUGG------CGGGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 18287 0.66 0.722631
Target:  5'- uGCGCGGuacguCGUGACgGUCacgaCCUUGCg- -3'
miRNA:   3'- gCGCGUCu----GCACUGgCGG----GGAACGac -5'
23558 5' -59.5 NC_005261.1 + 6028 0.66 0.741947
Target:  5'- gGCGCGGGCGggcccgGACCcaagcaaugcggGCCCCcgcccgcGCUGc -3'
miRNA:   3'- gCGCGUCUGCa-----CUGG------------CGGGGaa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 48019 0.66 0.732331
Target:  5'- cCGCGCgaGGGCGcuccGCCGCCCCcgcGCUc -3'
miRNA:   3'- -GCGCG--UCUGCac--UGGCGGGGaa-CGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.