miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 119 0.68 0.592757
Target:  5'- cCGCGCcGGC---GCCGCCCCUggUGCUc -3'
miRNA:   3'- -GCGCGuCUGcacUGGCGGGGA--ACGAc -5'
23558 5' -59.5 NC_005261.1 + 204 0.69 0.562862
Target:  5'- aGCGguGcCGccGCCGCCCCUggUGCUc -3'
miRNA:   3'- gCGCguCuGCacUGGCGGGGA--ACGAc -5'
23558 5' -59.5 NC_005261.1 + 1600 0.71 0.467038
Target:  5'- gGCGCGGugGcUGGCCGCCUCgcccuccGCg- -3'
miRNA:   3'- gCGCGUCugC-ACUGGCGGGGaa-----CGac -5'
23558 5' -59.5 NC_005261.1 + 6028 0.66 0.741947
Target:  5'- gGCGCGGGCGggcccgGACCcaagcaaugcggGCCCCcgcccgcGCUGc -3'
miRNA:   3'- gCGCGUCUGCa-----CUGG------------CGGGGaa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 7033 0.66 0.75147
Target:  5'- gCGCGCcGGCGgcGACCGCgCCgcggGCg- -3'
miRNA:   3'- -GCGCGuCUGCa-CUGGCGgGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 7905 0.66 0.722631
Target:  5'- aGCGCGGcCG-GGCCGUCCauggcGCUGc -3'
miRNA:   3'- gCGCGUCuGCaCUGGCGGGgaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 7951 0.68 0.587752
Target:  5'- uGUGCGGGCGUGGCgggggcgcgcgggaCGCCCCcaguacgagccGCUGg -3'
miRNA:   3'- gCGCGUCUGCACUG--------------GCGGGGaa---------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 8041 0.68 0.592757
Target:  5'- --gGCGGugGUGGCCGUcagcuCCCU-GCUGc -3'
miRNA:   3'- gcgCGUCugCACUGGCG-----GGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 8256 0.68 0.643045
Target:  5'- aGCGCAuGCGcgacacuugccUGGCCGCCCU--GCUGc -3'
miRNA:   3'- gCGCGUcUGC-----------ACUGGCGGGGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 9797 0.67 0.673176
Target:  5'- cCGCGCuGuucgccaugguGCGcGGCCuugaCCCCUUGCUGg -3'
miRNA:   3'- -GCGCGuC-----------UGCaCUGGc---GGGGAACGAC- -5'
23558 5' -59.5 NC_005261.1 + 10375 0.7 0.494991
Target:  5'- uCGUGCccuGGCGccgcGACCGCCCCguccGCUGc -3'
miRNA:   3'- -GCGCGu--CUGCa---CUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 10955 0.66 0.722631
Target:  5'- cCGCcccCAGACGcgugGGCCGCCCCgccccGCg- -3'
miRNA:   3'- -GCGc--GUCUGCa---CUGGCGGGGaa---CGac -5'
23558 5' -59.5 NC_005261.1 + 11266 0.66 0.732331
Target:  5'- cCGCGCGGuucGCGcuGCCGCCCCc-GCg- -3'
miRNA:   3'- -GCGCGUC---UGCacUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 11718 0.68 0.643045
Target:  5'- gGCGCGGGCGcccaggcaGACCGCCUgCggcaGCUGg -3'
miRNA:   3'- gCGCGUCUGCa-------CUGGCGGG-Gaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 11782 0.69 0.533385
Target:  5'- gCGCGCuGGCGcGGCUGgCCUUUGCg- -3'
miRNA:   3'- -GCGCGuCUGCaCUGGCgGGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 12332 0.66 0.75147
Target:  5'- gCGCGCuuggccGGCGcGGCCGCCgCCgcgGCg- -3'
miRNA:   3'- -GCGCGu-----CUGCaCUGGCGG-GGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 12582 0.66 0.732331
Target:  5'- aCGCGCugcuGGgG-GACCGCCUCaaccagcUGCUGg -3'
miRNA:   3'- -GCGCGu---CUgCaCUGGCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 13733 0.69 0.543154
Target:  5'- gGgGUGGGCuUGGCCGCCCCUcGCc- -3'
miRNA:   3'- gCgCGUCUGcACUGGCGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 13758 0.66 0.75147
Target:  5'- gGCgGCAuGuACGUGGgCGCCCCUgaggGCa- -3'
miRNA:   3'- gCG-CGU-C-UGCACUgGCGGGGAa---CGac -5'
23558 5' -59.5 NC_005261.1 + 14533 0.69 0.552982
Target:  5'- gGCGguGGCGcGGCCGCCCg--GCg- -3'
miRNA:   3'- gCGCguCUGCaCUGGCGGGgaaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.