miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 31681 0.71 0.448863
Target:  5'- gCGCGCcggcccGGACGcGGCCGCCgCCgaggaggcggUGCUGg -3'
miRNA:   3'- -GCGCG------UCUGCaCUGGCGG-GGa---------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 31786 0.73 0.348796
Target:  5'- cCGCGCGGACGUGGCCGa-CUggGCg- -3'
miRNA:   3'- -GCGCGUCUGCACUGGCggGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 78389 0.73 0.356503
Target:  5'- cCGCGCA----UGGCCGCCCUcUGCUGg -3'
miRNA:   3'- -GCGCGUcugcACUGGCGGGGaACGAC- -5'
23558 5' -59.5 NC_005261.1 + 22926 0.72 0.372274
Target:  5'- uCGCGCAGACGUGcGCCGaCgCgUUGCg- -3'
miRNA:   3'- -GCGCGUCUGCAC-UGGC-GgGgAACGac -5'
23558 5' -59.5 NC_005261.1 + 74115 0.72 0.396805
Target:  5'- cCGCGCGGcACGUG-CCGCCCg-UGCc- -3'
miRNA:   3'- -GCGCGUC-UGCACuGGCGGGgaACGac -5'
23558 5' -59.5 NC_005261.1 + 55830 0.72 0.413726
Target:  5'- gGCGCGGGgGacGACgGCCCCgcggGCUGg -3'
miRNA:   3'- gCGCGUCUgCa-CUGgCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 72134 0.71 0.431085
Target:  5'- uGCGCGggcuggauGACGUGGCCGCgCaucUGCUGg -3'
miRNA:   3'- gCGCGU--------CUGCACUGGCGgGga-ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 30211 0.71 0.431085
Target:  5'- -aCGCGGACGUGcuGCCGCUgCUgggGCUGc -3'
miRNA:   3'- gcGCGUCUGCAC--UGGCGGgGAa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 133107 0.71 0.439923
Target:  5'- aGCGCcGGCG-GGCCGCCCgCgccgaGCUGg -3'
miRNA:   3'- gCGCGuCUGCaCUGGCGGG-Gaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 51542 0.73 0.348796
Target:  5'- gGCGCGuACGUgGGCCGCCUCgccggGCUGg -3'
miRNA:   3'- gCGCGUcUGCA-CUGGCGGGGaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 34807 0.73 0.348796
Target:  5'- gCGCGCGcGCGUGGCCGCggCCCgcgcggaGCUGg -3'
miRNA:   3'- -GCGCGUcUGCACUGGCG--GGGaa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 90307 0.73 0.341208
Target:  5'- gCGCGCgGGACGUGACgGCCgCgcgGUUGg -3'
miRNA:   3'- -GCGCG-UCUGCACUGgCGGgGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 126353 0.77 0.19453
Target:  5'- gCGUGCGGGCG-GGCuCGCCCCgcaGCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUG-GCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 50184 0.77 0.204278
Target:  5'- gGCGCAGGCGcgugacugGACCGCCCCcagGCa- -3'
miRNA:   3'- gCGCGUCUGCa-------CUGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 63870 0.75 0.265683
Target:  5'- gGgGCGGACGcGGCCGCCCCUUccGCc- -3'
miRNA:   3'- gCgCGUCUGCaCUGGCGGGGAA--CGac -5'
23558 5' -59.5 NC_005261.1 + 70782 0.74 0.284841
Target:  5'- gCGUGCGGGCGgaccGGCUGCCCUUUgggcGCUGg -3'
miRNA:   3'- -GCGCGUCUGCa---CUGGCGGGGAA----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 76015 0.74 0.291466
Target:  5'- gGCGCAGACGcGGCCGCgcgcaCCCUcgcGCUGc -3'
miRNA:   3'- gCGCGUCUGCaCUGGCG-----GGGAa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 86364 0.74 0.291466
Target:  5'- cCGCGCGGcgcucACGUGGCCGUagaaggcgcugCCCUUGCg- -3'
miRNA:   3'- -GCGCGUC-----UGCACUGGCG-----------GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 20193 0.74 0.29821
Target:  5'- aGCGCGGGCGUcgcGGCCggGCCCCgcgUGCg- -3'
miRNA:   3'- gCGCGUCUGCA---CUGG--CGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 75225 0.74 0.305075
Target:  5'- cCGCGCGGGCGcGGCCGCCgagggCCg-GCUGg -3'
miRNA:   3'- -GCGCGUCUGCaCUGGCGG-----GGaaCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.