miRNA display CGI


Results 81 - 100 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 135870 0.67 0.45572
Target:  5'- gGCGGcGCGUGGCCuggaugucGCagaucgcGGACCCCGa -3'
miRNA:   3'- gUGCC-UGCACCGG--------CGgga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 67538 0.67 0.464473
Target:  5'- -cCGcGCG-GGCCGCgCUGGACgCCUGg -3'
miRNA:   3'- guGCcUGCaCCGGCGgGACCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 39490 0.67 0.45572
Target:  5'- gCGCGGccaacgcccGCGcGGCCGCgugcccccaaggCC-GGACCCCGg -3'
miRNA:   3'- -GUGCC---------UGCaCCGGCG------------GGaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 81817 0.67 0.45572
Target:  5'- gGCGGgugcgccgcgaaGCGaGGgCGCCCaGGGCCCCc -3'
miRNA:   3'- gUGCC------------UGCaCCgGCGGGaCCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 84814 0.67 0.45572
Target:  5'- gGCGGACGgcggggGGCCGCagacgagCUcGGGCCCg- -3'
miRNA:   3'- gUGCCUGCa-----CCGGCGg------GA-CCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 74117 0.67 0.463594
Target:  5'- gCGCGGcACGU-GCCGCCCgugccgcacuuugUGGGCgCCa -3'
miRNA:   3'- -GUGCC-UGCAcCGGCGGG-------------ACCUGgGGc -5'
23559 5' -64.2 NC_005261.1 + 4957 0.67 0.464473
Target:  5'- gGCGGGCGccGG-CGCCCUGGuACUCgCGc -3'
miRNA:   3'- gUGCCUGCa-CCgGCGGGACC-UGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 54291 0.67 0.464473
Target:  5'- gGCGGggacaGCGaUGGCgGCCgCgcgcucGGACCCCGu -3'
miRNA:   3'- gUGCC-----UGC-ACCGgCGG-Ga-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 101281 0.67 0.45572
Target:  5'- cCGCGcGGCG-GGCCuugcGCCagcgcaGGGCCCCGg -3'
miRNA:   3'- -GUGC-CUGCaCCGG----CGGga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 114774 0.67 0.45485
Target:  5'- cCGCGGGCcUGGCgccuucUGCCCUGaGgacuggcGCCCCGa -3'
miRNA:   3'- -GUGCCUGcACCG------GCGGGAC-C-------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 50505 0.67 0.473313
Target:  5'- uGC-GACGcGGCC-CaCCUGGACCUCGa -3'
miRNA:   3'- gUGcCUGCaCCGGcG-GGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 15221 0.67 0.500322
Target:  5'- uCGCGGACGccacGGCCGCggCCguaGuGGCCCUGc -3'
miRNA:   3'- -GUGCCUGCa---CCGGCG--GGa--C-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 136482 0.67 0.491241
Target:  5'- aCACGG---UGGCCacGCgCCUGGGCCCgCGc -3'
miRNA:   3'- -GUGCCugcACCGG--CG-GGACCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 33054 0.67 0.491241
Target:  5'- cCGCGGcgGCGgcgGGCC-CCgUGGACgCCGc -3'
miRNA:   3'- -GUGCC--UGCa--CCGGcGGgACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 47945 0.67 0.491241
Target:  5'- gACGGggucgACGUGGaaGCCCgacucGGGCUCCa -3'
miRNA:   3'- gUGCC-----UGCACCggCGGGa----CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 79078 0.67 0.464473
Target:  5'- gGCGGGCGccGCgCGCCCgGGGCgCgCCGg -3'
miRNA:   3'- gUGCCUGCacCG-GCGGGaCCUG-G-GGC- -5'
23559 5' -64.2 NC_005261.1 + 98822 0.67 0.482237
Target:  5'- gACGGG-GUGGCCGCUg-GGGCUCgGg -3'
miRNA:   3'- gUGCCUgCACCGGCGGgaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 38456 0.67 0.482237
Target:  5'- aCugGGACccgGGCCGCCUcu--CCCCGu -3'
miRNA:   3'- -GugCCUGca-CCGGCGGGaccuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 64485 0.67 0.482237
Target:  5'- aGCGGcCGUGGCa--CC-GGACCCCc -3'
miRNA:   3'- gUGCCuGCACCGgcgGGaCCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 50285 0.67 0.473313
Target:  5'- gGCGGGcCGUGGCgGCgCgcggcuccaGGCCCCGg -3'
miRNA:   3'- gUGCCU-GCACCGgCGgGac-------CUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.