miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 138129 0.69 0.364328
Target:  5'- gCGCGGGCGgcggggcccgggGGCgCGCCCcGcACCCCGc -3'
miRNA:   3'- -GUGCCUGCa-----------CCG-GCGGGaCcUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 138027 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137887 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137767 0.73 0.19593
Target:  5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3'
miRNA:   3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137140 0.71 0.270324
Target:  5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3'
miRNA:   3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 136482 0.67 0.491241
Target:  5'- aCACGG---UGGCCacGCgCCUGGGCCCgCGc -3'
miRNA:   3'- -GUGCCugcACCGG--CG-GGACCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 136200 0.69 0.365086
Target:  5'- cCGCGGcGCGgcggcGGCugaucgugaucgaCGCCgUGGACCCCGc -3'
miRNA:   3'- -GUGCC-UGCa----CCG-------------GCGGgACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 135907 0.67 0.491241
Target:  5'- uGCGGGC-UGGUCGCcaacuucacCCUGGuuCCCGu -3'
miRNA:   3'- gUGCCUGcACCGGCG---------GGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 135870 0.67 0.45572
Target:  5'- gGCGGcGCGUGGCCuggaugucGCagaucgcGGACCCCGa -3'
miRNA:   3'- gUGCC-UGCACCGG--------CGgga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 135655 0.67 0.481341
Target:  5'- gCGCGGGCGcgGGCgGCCCUcgcucgaGGAgCUCu -3'
miRNA:   3'- -GUGCCUGCa-CCGgCGGGA-------CCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 135580 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 135419 0.69 0.365846
Target:  5'- -uCGGGCuggGGCCGCCC-GG-CCCCu -3'
miRNA:   3'- guGCCUGca-CCGGCGGGaCCuGGGGc -5'
23559 5' -64.2 NC_005261.1 + 135211 0.68 0.43001
Target:  5'- aCGgGGACGgGGagGCCCgcgGGAgCCCCGg -3'
miRNA:   3'- -GUgCCUGCaCCggCGGGa--CCU-GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 135061 0.66 0.556209
Target:  5'- --aGGACGaggaagaGGCCGCCgCcgccgGGGCCUCGg -3'
miRNA:   3'- gugCCUGCa------CCGGCGG-Ga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 134985 0.71 0.288963
Target:  5'- --aGGACGgGGCCGCCggGGcGCCCCu -3'
miRNA:   3'- gugCCUGCaCCGGCGGgaCC-UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 133768 0.69 0.389123
Target:  5'- cCGCGcGACG-GGCCGCCgccgCUGGAgggCCCGc -3'
miRNA:   3'- -GUGC-CUGCaCCGGCGG----GACCUg--GGGC- -5'
23559 5' -64.2 NC_005261.1 + 133366 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 132959 0.68 0.435933
Target:  5'- gCGCcGACGUGGCCGCCUUcgucgccgcgcaccGcGACCCg- -3'
miRNA:   3'- -GUGcCUGCACCGGCGGGA--------------C-CUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 132642 0.71 0.270324
Target:  5'- aCGCGGGCGcGGCgGCCCUaGcGGCCgCGu -3'
miRNA:   3'- -GUGCCUGCaCCGgCGGGA-C-CUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 132575 0.7 0.329233
Target:  5'- uGCGaaGACGUcGGCgCGCCCgcGGACgCCCGg -3'
miRNA:   3'- gUGC--CUGCA-CCG-GCGGGa-CCUG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.