miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 117691 0.66 0.565715
Target:  5'- cCGCGG-CGaGGCCgGCCCUGaGGCCg-- -3'
miRNA:   3'- -GUGCCuGCaCCGG-CGGGAC-CUGGggc -5'
23559 5' -64.2 NC_005261.1 + 51913 0.66 0.537342
Target:  5'- -cCGGGCGcgcagcGGCCGCggCCUGG-UCCCGc -3'
miRNA:   3'- guGCCUGCa-----CCGGCG--GGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137887 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 132030 1.08 0.000669
Target:  5'- uCACGGACGUGGCCGCCCUGGACCCCGg -3'
miRNA:   3'- -GUGCCUGCACCGGCGGGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 2613 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 113557 0.66 0.560006
Target:  5'- gCGCuGGACcgcgagcaguggucgGUGGCCGCCgcgCUGGGCgaccucgcgCCCGg -3'
miRNA:   3'- -GUG-CCUG---------------CACCGGCGG---GACCUG---------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 118953 0.66 0.556209
Target:  5'- cCGCGGcgcACGUGGCCaagGUCCUGcACgCCGc -3'
miRNA:   3'- -GUGCC---UGCACCGG---CGGGACcUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 89420 0.66 0.556209
Target:  5'- gCGCGuGCGcGGCCGCCg-GGcuCCCCGc -3'
miRNA:   3'- -GUGCcUGCaCCGGCGGgaCCu-GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 98566 0.66 0.546749
Target:  5'- gGCGGGC--GGCCGUCCUccgcGGGCUCgGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGGA----CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 76467 0.66 0.537342
Target:  5'- gGCGG-CGccGGCgCGCgCgcGGACCCCGa -3'
miRNA:   3'- gUGCCuGCa-CCG-GCGgGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 76750 0.66 0.545806
Target:  5'- uCGCGGACGUGGCgcaccccgCGUUCUucggcgcGGAcgcCCCCGc -3'
miRNA:   3'- -GUGCCUGCACCG--------GCGGGA-------CCU---GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 20192 0.66 0.546749
Target:  5'- aGCaGGCGaagcggGGCCGCCaaaGGCCCCGc -3'
miRNA:   3'- gUGcCUGCa-----CCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 97642 0.66 0.565715
Target:  5'- aGCGGGCGcggGuGCCGCaCCUGGGgggCCGg -3'
miRNA:   3'- gUGCCUGCa--C-CGGCG-GGACCUgg-GGC- -5'
23559 5' -64.2 NC_005261.1 + 61421 0.66 0.545806
Target:  5'- uCGCaGGACcUGGCCucgcugaccaugcGCCUgcagacGGACCCCGu -3'
miRNA:   3'- -GUG-CCUGcACCGG-------------CGGGa-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 58992 0.66 0.565715
Target:  5'- cCACGGGCGgcggugcgccgGGCuCGCCCaGcGGCgCCGc -3'
miRNA:   3'- -GUGCCUGCa----------CCG-GCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 30544 0.66 0.556209
Target:  5'- --aGGACGaggaagaGGCCGCCgCcgccgGGGCCUCGg -3'
miRNA:   3'- gugCCUGCa------CCGGCGG-Ga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 85015 0.66 0.537342
Target:  5'- cCGCGGggucGCGcGGCCGCCgc--GCCCCGg -3'
miRNA:   3'- -GUGCC----UGCaCCGGCGGgaccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 45941 0.66 0.537342
Target:  5'- cCGCGcGCGagGGCCGCCa-GGGCgCCGu -3'
miRNA:   3'- -GUGCcUGCa-CCGGCGGgaCCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 31062 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 110832 0.66 0.556209
Target:  5'- cCGCGGACGaguuuccgcUGcCCGCCCUGGcgaacaGCCgCGc -3'
miRNA:   3'- -GUGCCUGC---------ACcGGCGGGACC------UGGgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.