Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 14955 | 0.66 | 0.762006 |
Target: 5'- gGCGGGACGUCAGCacuccGGGuuaacGGCGCaguUACa -3' miRNA: 3'- gCGCUUUGCAGUCG-----CCU-----UCGUG---GUGa -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 12654 | 0.66 | 0.740888 |
Target: 5'- gGCGggGCuGUUGGUGGcGGCGcauCCGCg -3' miRNA: 3'- gCGCuuUG-CAGUCGCCuUCGU---GGUGa -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 12041 | 0.66 | 0.73982 |
Target: 5'- gGCGGAGaGUCAGUucgcgguacuggaGGAGGCGgCGCa -3' miRNA: 3'- gCGCUUUgCAGUCG-------------CCUUCGUgGUGa -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 32272 | 0.67 | 0.719313 |
Target: 5'- uGCaGAACGUCAGcCGGAAcgcGaCAUCACUc -3' miRNA: 3'- gCGcUUUGCAGUC-GCCUU---C-GUGGUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 14156 | 0.68 | 0.641593 |
Target: 5'- gGCGAuguGCGcCAGCGGAGucGUGCgGCUu -3' miRNA: 3'- gCGCUu--UGCaGUCGCCUU--CGUGgUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 8111 | 0.68 | 0.641593 |
Target: 5'- aCGCGGuuAAUGgccauugCGGCGGcaccAGGCACCGCc -3' miRNA: 3'- -GCGCU--UUGCa------GUCGCC----UUCGUGGUGa -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 13708 | 0.69 | 0.607923 |
Target: 5'- --aGAAAcCGUCAGCGuGggGCGCgUACUg -3' miRNA: 3'- gcgCUUU-GCAGUCGC-CuuCGUG-GUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 12017 | 0.69 | 0.607923 |
Target: 5'- uGCcuGAAGCGUCAGCaGGGcAGCAUgagCACUg -3' miRNA: 3'- gCG--CUUUGCAGUCG-CCU-UCGUG---GUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 9107 | 0.69 | 0.585569 |
Target: 5'- aCGCGAccagucAACGUCugaaAGCGGAuucgcguaagGGuCACCGCUc -3' miRNA: 3'- -GCGCU------UUGCAG----UCGCCU----------UC-GUGGUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 4813 | 0.69 | 0.563376 |
Target: 5'- gGCGGGAUGgUGGCGGggGCAUUugACUg -3' miRNA: 3'- gCGCUUUGCaGUCGCCuuCGUGG--UGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 46080 | 0.69 | 0.563376 |
Target: 5'- uGCaGAuGCGUCAGCGuGAuguuGCugCGCUc -3' miRNA: 3'- gCG-CUuUGCAGUCGC-CUu---CGugGUGA- -5' |
|||||||
2356 | 5' | -53.7 | NC_001416.1 | + | 18661 | 1.09 | 0.001281 |
Target: 5'- cCGCGAAACGUCAGCGGAAGCACCACUa -3' miRNA: 3'- -GCGCUUUGCAGUCGCCUUCGUGGUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home