miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 97673 0.66 0.972815
Target:  5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3'
miRNA:   3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 47882 0.66 0.963543
Target:  5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3'
miRNA:   3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 97241 0.66 0.963543
Target:  5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3'
miRNA:   3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 23291 0.66 0.968728
Target:  5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3'
miRNA:   3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 125111 0.66 0.969938
Target:  5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3'
miRNA:   3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 125034 0.66 0.972815
Target:  5'- -cUCCGGuggGGCgcugAC-UCGGGCAGGGCc -3'
miRNA:   3'- gcAGGCC---UCGa---UGuAGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 86645 0.66 0.969938
Target:  5'- gCGUCaggaGGAGCacgGCggCGAGgCAGAagACGg -3'
miRNA:   3'- -GCAGg---CCUCGa--UGuaGCUC-GUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 127808 0.66 0.968728
Target:  5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3'
miRNA:   3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 102597 0.66 0.966849
Target:  5'- uGgggCUGGGGCUGgGgcUUGGGCAGaAACGg -3'
miRNA:   3'- gCa--GGCCUCGAUgU--AGCUCGUC-UUGC- -5'
23560 3' -53.3 NC_005261.1 + 57903 0.66 0.966849
Target:  5'- aGgCCGGGGCcGCgGUCGAGCGcgucuaccguGAGCGc -3'
miRNA:   3'- gCaGGCCUCGaUG-UAGCUCGU----------CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 100460 0.66 0.963543
Target:  5'- aGUCCguuGGGGCgccgGCGcUUGGGCGGcGCGg -3'
miRNA:   3'- gCAGG---CCUCGa---UGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 7530 0.66 0.956255
Target:  5'- aCGUCCucggcGAGgUGC-UCGAGCAGcACGc -3'
miRNA:   3'- -GCAGGc----CUCgAUGuAGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 47744 0.66 0.956255
Target:  5'- aGUCgCGGAGCaGCAcgcUGAGCAGGcucucGCGc -3'
miRNA:   3'- gCAG-GCCUCGaUGUa--GCUCGUCU-----UGC- -5'
23560 3' -53.3 NC_005261.1 + 75300 0.67 0.952263
Target:  5'- gGUgCGGGGCUGCcugccggUGGGCuAGGGCGc -3'
miRNA:   3'- gCAgGCCUCGAUGua-----GCUCG-UCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 116371 0.67 0.952263
Target:  5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3'
miRNA:   3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 42185 0.67 0.951436
Target:  5'- cCGUCCuGGAGCgggcgggacgcgGCGUUGAGCAcGuGCa -3'
miRNA:   3'- -GCAGG-CCUCGa-----------UGUAGCUCGU-CuUGc -5'
23560 3' -53.3 NC_005261.1 + 34412 0.67 0.948033
Target:  5'- -cUCCGcGAGCUGCuggcggCGGGCGcAACGg -3'
miRNA:   3'- gcAGGC-CUCGAUGua----GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 132227 0.67 0.952263
Target:  5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3'
miRNA:   3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 128899 0.67 0.952263
Target:  5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3'
miRNA:   3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 128499 0.67 0.952263
Target:  5'- -uUCCGGgcgGGCUA-GUCGcGGCGGAGCGc -3'
miRNA:   3'- gcAGGCC---UCGAUgUAGC-UCGUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.