miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 33552 0.66 0.570547
Target:  5'- gCGguGGCCcaGGCGC-UGcCGCAGCa- -3'
miRNA:   3'- gGCguCCGG--UCGCGcACcGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 99016 0.66 0.541447
Target:  5'- gCGCgaGGGCCAugGCGgcuaccGGUGCGGCUGc -3'
miRNA:   3'- gGCG--UCCGGUcgCGCa-----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 127680 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 31581 0.66 0.564693
Target:  5'- aCCGCGccGGCgAGCGCGacgucgccgagcucgUcGCGCGGCUc -3'
miRNA:   3'- -GGCGU--CCGgUCGCGC---------------AcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 21616 0.66 0.551097
Target:  5'- uCgGCGGGCgggCGGUGCGagGGCuGCGGCa- -3'
miRNA:   3'- -GgCGUCCG---GUCGCGCa-CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 45371 0.66 0.541447
Target:  5'- aCCGCGGGa-GGUGCGgccgGGCccgGgAGCUGg -3'
miRNA:   3'- -GGCGUCCggUCGCGCa---CCG---CgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 87408 0.66 0.551097
Target:  5'- cUCGCGGcGCCAagccGCGCGgagcccgucaUGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGGU----CGCGC----------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 115036 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 19537 0.66 0.541447
Target:  5'- -aGCAGGaCCAcgccGCGCGUGcGC-CAGCg- -3'
miRNA:   3'- ggCGUCC-GGU----CGCGCAC-CGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 82797 0.66 0.541447
Target:  5'- gCCGCucggaGGGCUcGCG-GUGGCGcCAGCc- -3'
miRNA:   3'- -GGCG-----UCCGGuCGCgCACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 33324 0.66 0.560799
Target:  5'- aCCGC-GGCCcuggAGgGCGUccgGGCGCAcGCg- -3'
miRNA:   3'- -GGCGuCCGG----UCgCGCA---CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 43611 0.66 0.551097
Target:  5'- aCGaCGGcGCCGGCgGCGgcgagGGCGCGcGCUc -3'
miRNA:   3'- gGC-GUC-CGGUCG-CGCa----CCGCGU-CGAc -5'
23561 3' -62.9 NC_005261.1 + 98892 0.66 0.541447
Target:  5'- gCCGCGcgcagcuuGGCC-GCG-GcGGCGCGGUUGg -3'
miRNA:   3'- -GGCGU--------CCGGuCGCgCaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 4391 0.66 0.570547
Target:  5'- gCGCcGGCCacGGCGCGcacgcggccGCGCAGCg- -3'
miRNA:   3'- gGCGuCCGG--UCGCGCac-------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 57963 0.66 0.580335
Target:  5'- gCGCAcGCCGGCGaCGcaGGCGCGcGCg- -3'
miRNA:   3'- gGCGUcCGGUCGC-GCa-CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 4856 0.66 0.530899
Target:  5'- cCCGUGGGCC-GCGCGcagGcagccgaagcccuGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCGCa--C-------------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 61194 0.66 0.531854
Target:  5'- gCCGaGGGCCGcgcGCGCGgccucGGCGuCGGCg- -3'
miRNA:   3'- -GGCgUCCGGU---CGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 19701 0.66 0.530899
Target:  5'- gCCGCagGGGUCGGCGgGgcagGGCGCcucgccgAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCgCa---CCGCG-------UCGac -5'
23561 3' -62.9 NC_005261.1 + 62932 0.66 0.570547
Target:  5'- aCGguGGCgCGGUGCGcgaGGUGCAgGCa- -3'
miRNA:   3'- gGCguCCG-GUCGCGCa--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 34460 0.66 0.560799
Target:  5'- cUCGC-GGCC--UGgGUGGCGCuGCUGc -3'
miRNA:   3'- -GGCGuCCGGucGCgCACCGCGuCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.