miRNA display CGI

Results 121 - 140 of 791 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23561	3'	-62.9	NC_005261.1	+	136241	0.66	0.531854
	Target:  5'- cCCGCGaacuGGCC-GCGCGaUGGCcCGGCc- -3' miRNA:   3'- -GGCGU----CCGGuCGCGC-ACCGcGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	20448	0.66	0.541447
	Target:  5'- gCGCAGacguGCCcGCGCG-GGUGUGGCg- -3' miRNA:   3'- gGCGUC----CGGuCGCGCaCCGCGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	45371	0.66	0.541447
	Target:  5'- aCCGCGGGa-GGUGCGgccgGGCccgGgAGCUGg -3' miRNA:   3'- -GGCGUCCggUCGCGCa---CCG---CgUCGAC- -5'
23561	3'	-62.9	NC_005261.1	+	4856	0.66	0.530899
	Target:  5'- cCCGUGGGCC-GCGCGcagGcagccgaagcccuGCGCGGCa- -3' miRNA:   3'- -GGCGUCCGGuCGCGCa--C-------------CGCGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	62517	0.66	0.541447
	Target:  5'- uCUGCAGGaaGGCGCc--GCGCGGCa- -3' miRNA:   3'- -GGCGUCCggUCGCGcacCGCGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	10478	0.66	0.55013
	Target:  5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3' miRNA:   3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	116481	0.66	0.560799
	Target:  5'- gCGCGGGCgGG-GCG-GGCGC-GCg- -3' miRNA:   3'- gGCGUCCGgUCgCGCaCCGCGuCGac -5'
23561	3'	-62.9	NC_005261.1	+	72986	0.66	0.541447
	Target:  5'- uCCGCGagcgcGGCCAGCGCGUccGCGUccgcccaccccAGCg- -3' miRNA:   3'- -GGCGU-----CCGGUCGCGCAc-CGCG-----------UCGac -5'
23561	3'	-62.9	NC_005261.1	+	14126	0.66	0.531854
	Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3' miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5'
23561	3'	-62.9	NC_005261.1	+	41874	0.66	0.531854
	Target:  5'- gCCGCgccAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3' miRNA:   3'- -GGCG---UCCGGUCG----CGCA--CCGCGU-CGac -5'
23561	3'	-62.9	NC_005261.1	+	115036	0.66	0.532811
	Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3' miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561	3'	-62.9	NC_005261.1	+	4390	0.66	0.541447
	Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3' miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561	3'	-62.9	NC_005261.1	+	94540	0.66	0.541447
	Target:  5'- -gGCAGGCCAGgaccuCGcCGUGGaGCcGCUGc -3' miRNA:   3'- ggCGUCCGGUC-----GC-GCACCgCGuCGAC- -5'
23561	3'	-62.9	NC_005261.1	+	78982	0.66	0.541447
	Target:  5'- gCGUGGcGCCGGCGCccgcucucgcucGUGGCccgGCGGCa- -3' miRNA:   3'- gGCGUC-CGGUCGCG------------CACCG---CGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	12170	0.66	0.570547
	Target:  5'- cCCGCacAGGCCAGCGCcGccGCcaccauGCAGCg- -3' miRNA:   3'- -GGCG--UCCGGUCGCG-CacCG------CGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	100192	0.66	0.541447
	Target:  5'- gCgGCGGGgCAGCGUGgcGGCcaGCAGCc- -3' miRNA:   3'- -GgCGUCCgGUCGCGCa-CCG--CGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	108556	0.67	0.49415
	Target:  5'- gCgGCAGcGCCcacAGCGCGUucuGCGCGGCc- -3' miRNA:   3'- -GgCGUC-CGG---UCGCGCAc--CGCGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	88763	0.67	0.492295
	Target:  5'- uCCGCGcGGCCuGCGCGcccgccuuccgcGGCGCGcGCg- -3' miRNA:   3'- -GGCGU-CCGGuCGCGCa-----------CCGCGU-CGac -5'
23561	3'	-62.9	NC_005261.1	+	107068	0.67	0.493222
	Target:  5'- gCCGCGGcGCUgggcgcgGGCGUGUGGUacuccccggGCGGCa- -3' miRNA:   3'- -GGCGUC-CGG-------UCGCGCACCG---------CGUCGac -5'
23561	3'	-62.9	NC_005261.1	+	104784	0.67	0.49415
	Target:  5'- gCUGCGGGgCGGCuGCGgcggcggcugcGGCGgCGGCUGc -3' miRNA:   3'- -GGCGUCCgGUCG-CGCa----------CCGC-GUCGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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