miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 67650 0.73 0.222052
Target:  5'- aCGCGGGCCGcccguccGCGCGcGGCGCcaGGCg- -3'
miRNA:   3'- gGCGUCCGGU-------CGCGCaCCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 3429 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 33391 0.73 0.207247
Target:  5'- cCCGCGcGGUC--CGCGUGGCGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGGucGCGCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 8918 0.73 0.227899
Target:  5'- aCGCGGcGCCAGCGCa-GGCGCGGg-- -3'
miRNA:   3'- gGCGUC-CGGUCGCGcaCCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 60079 0.73 0.207247
Target:  5'- uCCGCGGGCU-GCGUG-GGCaGCAGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCGCaCCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79393 0.73 0.224694
Target:  5'- gUGCGGGagacCCAGCGCGggugccuggaggacgUGGCGCGGCg- -3'
miRNA:   3'- gGCGUCC----GGUCGCGC---------------ACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14670 0.73 0.217363
Target:  5'- aCGgGGGCCGGCGUGUGaCGguGCg- -3'
miRNA:   3'- gGCgUCCGGUCGCGCACcGCguCGac -5'
23561 3' -62.9 NC_005261.1 + 123250 0.73 0.217363
Target:  5'- gCGC-GGCCGGCGCGgccGCGCAGUc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 61446 0.73 0.217363
Target:  5'- gCGCGGcGCCAGCGCGggGGCGUccGCg- -3'
miRNA:   3'- gGCGUC-CGGUCGCGCa-CCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 55002 0.73 0.212253
Target:  5'- uCCGUGGGCCGGCGacUGGCGCuguGCa- -3'
miRNA:   3'- -GGCGUCCGGUCGCgcACCGCGu--CGac -5'
23561 3' -62.9 NC_005261.1 + 3864 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 107946 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 70477 0.73 0.207247
Target:  5'- gCCGCGGGUgCGcGCGCGUGaGCacGUAGCUGg -3'
miRNA:   3'- -GGCGUCCG-GU-CGCGCAC-CG--CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 105700 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 67540 0.72 0.238865
Target:  5'- gCGCGGGCC-GCGC-UGGaCGCcuGGCUGg -3'
miRNA:   3'- gGCGUCCGGuCGCGcACC-GCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 79136 0.72 0.244511
Target:  5'- gCGCcuGCgAGCGCGagGGCGCGGCg- -3'
miRNA:   3'- gGCGucCGgUCGCGCa-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 49135 0.72 0.244511
Target:  5'- gCGCGcGCCAGCGCGcccgGGCcGCAGCc- -3'
miRNA:   3'- gGCGUcCGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 117726 0.72 0.268208
Target:  5'- cCCGCAagcGGCC-GCGCGcUGGCGCcGCc- -3'
miRNA:   3'- -GGCGU---CCGGuCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 41079 0.72 0.242805
Target:  5'- gCCGgcCGGGCCGGCgccagcgccuccgaGCGUGGCcGCGGCg- -3'
miRNA:   3'- -GGC--GUCCGGUCG--------------CGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 41001 0.72 0.242805
Target:  5'- gCCGgcCGGGCCGGCgccagcgccuccgaGCGUGGCcGCGGCg- -3'
miRNA:   3'- -GGC--GUCCGGUCG--------------CGCACCG-CGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.