miRNA display CGI


Results 101 - 120 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 121785 0.72 0.244511
Target:  5'- gCCGC-GGCCGGCGgGcugggcagggGGCGCguGGCUGg -3'
miRNA:   3'- -GGCGuCCGGUCGCgCa---------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 68686 0.72 0.250267
Target:  5'- gCCGCguggGGGCCGGCGCGgacgacggcGGCGcCGGCc- -3'
miRNA:   3'- -GGCG----UCCGGUCGCGCa--------CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 30317 0.72 0.244511
Target:  5'- cCCGCcGGCggaAGUGCc-GGCGCGGCUGg -3'
miRNA:   3'- -GGCGuCCGg--UCGCGcaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 32233 0.72 0.250267
Target:  5'- gCGguGGCCuucuGCGCGgccGCGCuGCUGg -3'
miRNA:   3'- gGCguCCGGu---CGCGCac-CGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 76078 0.72 0.250267
Target:  5'- -gGCGGGCUgcuGCGCcucGUGGCGCuggAGCUGg -3'
miRNA:   3'- ggCGUCCGGu--CGCG---CACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 348 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 68165 0.72 0.244511
Target:  5'- uUCGguGGCCGGgGCGcUGGuCGCGGgUGc -3'
miRNA:   3'- -GGCguCCGGUCgCGC-ACC-GCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 67540 0.72 0.238865
Target:  5'- gCGCGGGCC-GCGC-UGGaCGCcuGGCUGg -3'
miRNA:   3'- gGCGUCCGGuCGCGcACC-GCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 49135 0.72 0.244511
Target:  5'- gCGCGcGCCAGCGCGcccgGGCcGCAGCc- -3'
miRNA:   3'- gGCGUcCGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79136 0.72 0.244511
Target:  5'- gCGCcuGCgAGCGCGagGGCGCGGCg- -3'
miRNA:   3'- gGCGucCGgUCGCGCa-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 41001 0.72 0.242805
Target:  5'- gCCGgcCGGGCCGGCgccagcgccuccgaGCGUGGCcGCGGCg- -3'
miRNA:   3'- -GGC--GUCCGGUCG--------------CGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 105700 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 59802 0.72 0.244511
Target:  5'- gCgGCAGGCCGGCGU--GGCGCcGCg- -3'
miRNA:   3'- -GgCGUCCGGUCGCGcaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 62423 0.72 0.243373
Target:  5'- cCCGCcgAGGCCAGCGCGagccggucgccgGGCcccaGCAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCa-----------CCG----CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 117726 0.72 0.268208
Target:  5'- cCCGCAagcGGCC-GCGCGcUGGCGCcGCc- -3'
miRNA:   3'- -GGCGU---CCGGuCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 124246 0.72 0.268208
Target:  5'- gCCGCGGGCaGGCGCc--GCGCGGCg- -3'
miRNA:   3'- -GGCGUCCGgUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 84855 0.72 0.264538
Target:  5'- aCCGCGGGCCgcguggccaugaccgAGCGCacgagGUGGCugGCGGCg- -3'
miRNA:   3'- -GGCGUCCGG---------------UCGCG-----CACCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 107512 0.72 0.262115
Target:  5'- aCGCAGGCCgcgccgaagggcAGCGCGUcGGCGgccacCAGCa- -3'
miRNA:   3'- gGCGUCCGG------------UCGCGCA-CCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 50007 0.72 0.262115
Target:  5'- gCCGCGccGCCAGCGCGcgGGCGCccAGCc- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCa-CCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 138019 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.