miRNA display CGI


Results 121 - 140 of 791 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 76078 0.72 0.250267
Target:  5'- -gGCGGGCUgcuGCGCcucGUGGCGCuggAGCUGg -3'
miRNA:   3'- ggCGUCCGGu--CGCG---CACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 77367 0.72 0.250267
Target:  5'- aC-CAGGCCAGCGCGUcuccGGCGCAccccCUGc -3'
miRNA:   3'- gGcGUCCGGUCGCGCA----CCGCGUc---GAC- -5'
23561 3' -62.9 NC_005261.1 + 12161 0.72 0.274415
Target:  5'- cCCGCcgAGGCCGGCGgGcggcUGGCGCcggAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCgC----ACCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 89403 0.72 0.250267
Target:  5'- gCCGCcGGCCuuccucGGCGCGU-GCGCGGCc- -3'
miRNA:   3'- -GGCGuCCGG------UCGCGCAcCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79304 0.72 0.274415
Target:  5'- uCCGgGcGGCguGCGCG-GGCGC-GCUGg -3'
miRNA:   3'- -GGCgU-CCGguCGCGCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 13339 0.72 0.256135
Target:  5'- cUCGCGcGGCCAGCG-GUcGGCGgaGGCUGg -3'
miRNA:   3'- -GGCGU-CCGGUCGCgCA-CCGCg-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 49476 0.72 0.256135
Target:  5'- gCGCAGGCC-GCGCGgaaGCuGCAGCa- -3'
miRNA:   3'- gGCGUCCGGuCGCGCac-CG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 49089 0.72 0.244511
Target:  5'- gCCGCGGGCCcgcugAGCGCGc-GCaGCAGCUc -3'
miRNA:   3'- -GGCGUCCGG-----UCGCGCacCG-CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 1182 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 59802 0.72 0.244511
Target:  5'- gCgGCAGGCCGGCGU--GGCGCcGCg- -3'
miRNA:   3'- -GgCGUCCGGUCGCGcaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 88851 0.72 0.262115
Target:  5'- aCGCuGGCCAGCGCGa-GCGaCAGCc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCacCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 41913 0.72 0.268208
Target:  5'- gCGCAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- gGCGUCCGGUCG----CGCA--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 126103 0.72 0.268208
Target:  5'- gCCGCGgcGGCgGGCGCcauccUGGCGCuagAGCUGg -3'
miRNA:   3'- -GGCGU--CCGgUCGCGc----ACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 37150 0.72 0.268208
Target:  5'- gCUGCAggcGGCCGcGgGCGUGGUGCuggGGCUGc -3'
miRNA:   3'- -GGCGU---CCGGU-CgCGCACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 75923 0.72 0.268208
Target:  5'- aCCGCgGGGCCGccGCGCGcccGCGCGGCg- -3'
miRNA:   3'- -GGCG-UCCGGU--CGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 70712 0.72 0.268208
Target:  5'- gCCGCGGGCgccgCGGCGaCGcUGGCcuacuacgcGCGGCUGg -3'
miRNA:   3'- -GGCGUCCG----GUCGC-GC-ACCG---------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 436 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 138119 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 51774 0.72 0.238306
Target:  5'- gCGCuGGCCGGCGUcgcccugcuggccGUGGCcaugcucgugcuGCGGCUGg -3'
miRNA:   3'- gGCGuCCGGUCGCG-------------CACCG------------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 62423 0.72 0.243373
Target:  5'- cCCGCcgAGGCCAGCGCGagccggucgccgGGCcccaGCAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCa-----------CCG----CGUCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.