miRNA display CGI


Results 141 - 160 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 76111 0.72 0.262115
Target:  5'- aCGCAgGGCCuGCaggacgGCGUGGCcaacgccaucguGCAGCUGg -3'
miRNA:   3'- gGCGU-CCGGuCG------CGCACCG------------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 79304 0.72 0.274415
Target:  5'- uCCGgGcGGCguGCGCG-GGCGC-GCUGg -3'
miRNA:   3'- -GGCgU-CCGguCGCGCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117650 0.72 0.274415
Target:  5'- aCGUAGGCCAcccGCGCcgccGGCGCcGCUGc -3'
miRNA:   3'- gGCGUCCGGU---CGCGca--CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 89403 0.72 0.250267
Target:  5'- gCCGCcGGCCuuccucGGCGCGU-GCGCGGCc- -3'
miRNA:   3'- -GGCGuCCGG------UCGCGCAcCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12161 0.72 0.274415
Target:  5'- cCCGCcgAGGCCGGCGgGcggcUGGCGCcggAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCgC----ACCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 105700 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 133257 0.72 0.274415
Target:  5'- cCCGCAGGCgGcGCGCGaguaccagGGCGcCGGCg- -3'
miRNA:   3'- -GGCGUCCGgU-CGCGCa-------CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 117726 0.72 0.268208
Target:  5'- cCCGCAagcGGCC-GCGCGcUGGCGCcGCc- -3'
miRNA:   3'- -GGCGU---CCGGuCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 124246 0.72 0.268208
Target:  5'- gCCGCGGGCaGGCGCc--GCGCGGCg- -3'
miRNA:   3'- -GGCGUCCGgUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 111588 0.72 0.268208
Target:  5'- cUCG-AGGCCgAGCacGCGgagugGGCGCGGCUGg -3'
miRNA:   3'- -GGCgUCCGG-UCG--CGCa----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 11697 0.72 0.274415
Target:  5'- gCGCGuGGCCgaGGCGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- gGCGU-CCGG--UCGCGCa--CCGCG-UCGac -5'
23561 3' -62.9 NC_005261.1 + 88851 0.72 0.262115
Target:  5'- aCGCuGGCCAGCGCGa-GCGaCAGCc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCacCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 41913 0.72 0.268208
Target:  5'- gCGCAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- gGCGUCCGGUCG----CGCA--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 126103 0.72 0.268208
Target:  5'- gCCGCGgcGGCgGGCGCcauccUGGCGCuagAGCUGg -3'
miRNA:   3'- -GGCGU--CCGgUCGCGc----ACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 37150 0.72 0.268208
Target:  5'- gCUGCAggcGGCCGcGgGCGUGGUGCuggGGCUGc -3'
miRNA:   3'- -GGCGU---CCGGU-CgCGCACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 75923 0.72 0.268208
Target:  5'- aCCGCgGGGCCGccGCGCGcccGCGCGGCg- -3'
miRNA:   3'- -GGCG-UCCGGU--CGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 70712 0.72 0.268208
Target:  5'- gCCGCGGGCgccgCGGCGaCGcUGGCcuacuacgcGCGGCUGg -3'
miRNA:   3'- -GGCGUCCG----GUCGC-GC-ACCG---------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 436 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 138119 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 85874 0.71 0.278194
Target:  5'- gCCGCGGGCuccggcuccggcggCAGCGCGgcgGGCGCcaaggacGGCg- -3'
miRNA:   3'- -GGCGUCCG--------------GUCGCGCa--CCGCG-------UCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.