miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 27652 0.73 0.217363
Target:  5'- gCGCAGGCCGGCaCGUGggccguggaGCGCGGgUGu -3'
miRNA:   3'- gGCGUCCGGUCGcGCAC---------CGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 61446 0.73 0.217363
Target:  5'- gCGCGGcGCCAGCGCGggGGCGUccGCg- -3'
miRNA:   3'- gGCGUC-CGGUCGCGCa-CCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 123250 0.73 0.217363
Target:  5'- gCGC-GGCCGGCGCGgccGCGCAGUc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14670 0.73 0.217363
Target:  5'- aCGgGGGCCGGCGUGUGaCGguGCg- -3'
miRNA:   3'- gGCgUCCGGUCGCGCACcGCguCGac -5'
23561 3' -62.9 NC_005261.1 + 67650 0.73 0.222052
Target:  5'- aCGCGGGCCGcccguccGCGCGcGGCGCcaGGCg- -3'
miRNA:   3'- gGCGUCCGGU-------CGCGCaCCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 79393 0.73 0.224694
Target:  5'- gUGCGGGagacCCAGCGCGggugccuggaggacgUGGCGCGGCg- -3'
miRNA:   3'- gGCGUCC----GGUCGCGC---------------ACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 64412 0.73 0.227899
Target:  5'- -aGcCGGGCUAgGCGCG-GGCGCGGCUu -3'
miRNA:   3'- ggC-GUCCGGU-CGCGCaCCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 103607 0.73 0.227899
Target:  5'- gCCGCGGcGgCAGCGCGggaGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CgGUCGCGCa--CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 8918 0.73 0.227899
Target:  5'- aCGCGGcGCCAGCGCa-GGCGCGGg-- -3'
miRNA:   3'- gGCGUC-CGGUCGCGcaCCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 89930 0.73 0.227899
Target:  5'- cCUGgAGcuGUCGGCG-GUGGCGCGGCUGg -3'
miRNA:   3'- -GGCgUC--CGGUCGCgCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 68986 0.73 0.233328
Target:  5'- gCGCGGGCCAGCGCcucGGCGaaccgcccCAGCg- -3'
miRNA:   3'- gGCGUCCGGUCGCGca-CCGC--------GUCGac -5'
23561 3' -62.9 NC_005261.1 + 3864 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 108381 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 34942 0.72 0.237192
Target:  5'- uUCGCGGGgcugcgcgcggcacCCGGCGCGcUGGaGCGGCUGu -3'
miRNA:   3'- -GGCGUCC--------------GGUCGCGC-ACCgCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 51774 0.72 0.238306
Target:  5'- gCGCuGGCCGGCGUcgcccugcuggccGUGGCcaugcucgugcuGCGGCUGg -3'
miRNA:   3'- gGCGuCCGGUCGCG-------------CACCG------------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 26312 0.72 0.238865
Target:  5'- aCUGCAGGCCgAGCGCGcacaGG-GCGGCg- -3'
miRNA:   3'- -GGCGUCCGG-UCGCGCa---CCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 67540 0.72 0.238865
Target:  5'- gCGCGGGCC-GCGC-UGGaCGCcuGGCUGg -3'
miRNA:   3'- gGCGUCCGGuCGCGcACC-GCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 41001 0.72 0.242805
Target:  5'- gCCGgcCGGGCCGGCgccagcgccuccgaGCGUGGCcGCGGCg- -3'
miRNA:   3'- -GGC--GUCCGGUCG--------------CGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 41079 0.72 0.242805
Target:  5'- gCCGgcCGGGCCGGCgccagcgccuccgaGCGUGGCcGCGGCg- -3'
miRNA:   3'- -GGC--GUCCGGUCG--------------CGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 62423 0.72 0.243373
Target:  5'- cCCGCcgAGGCCAGCGCGagccggucgccgGGCcccaGCAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCa-----------CCG----CGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.