miRNA display CGI


Results 121 - 140 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 65500 0.72 0.254952
Target:  5'- aUGCGGGCCGcccGCGCGgacggggcggcgGGCGCGacGCUGg -3'
miRNA:   3'- gGCGUCCGGU---CGCGCa-----------CCGCGU--CGAC- -5'
23561 3' -62.9 NC_005261.1 + 91690 0.72 0.255543
Target:  5'- gCUGCGGgacgacuGCCAGCGCGcagcggaGGCGguGCUGc -3'
miRNA:   3'- -GGCGUC-------CGGUCGCGCa------CCGCguCGAC- -5'
23561 3' -62.9 NC_005261.1 + 21511 0.72 0.256135
Target:  5'- -aGCAGGgCGGCGaCGUcGGC-CAGCUGg -3'
miRNA:   3'- ggCGUCCgGUCGC-GCA-CCGcGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 138019 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 104865 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 13339 0.72 0.256135
Target:  5'- cUCGCGcGGCCAGCG-GUcGGCGgaGGCUGg -3'
miRNA:   3'- -GGCGU-CCGGUCGCgCA-CCGCg-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 73076 0.72 0.256135
Target:  5'- gCGCA--CCuucuGCGCGcUGGCGCGGCUGg -3'
miRNA:   3'- gGCGUccGGu---CGCGC-ACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 348 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 49476 0.72 0.256135
Target:  5'- gCGCAGGCC-GCGCGgaaGCuGCAGCa- -3'
miRNA:   3'- gGCGUCCGGuCGCGCac-CG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 75653 0.72 0.262115
Target:  5'- gCCGUGGuGCU-GCGCGUGGCGCcggggcgcauGCUGg -3'
miRNA:   3'- -GGCGUC-CGGuCGCGCACCGCGu---------CGAC- -5'
23561 3' -62.9 NC_005261.1 + 76111 0.72 0.262115
Target:  5'- aCGCAgGGCCuGCaggacgGCGUGGCcaacgccaucguGCAGCUGg -3'
miRNA:   3'- gGCGU-CCGGuCG------CGCACCG------------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 30357 0.72 0.262115
Target:  5'- gCCGCGGGCgCgAGCGCGcgGGCGgcCGGCg- -3'
miRNA:   3'- -GGCGUCCG-G-UCGCGCa-CCGC--GUCGac -5'
23561 3' -62.9 NC_005261.1 + 94510 0.72 0.262115
Target:  5'- -gGCAGaGCC-GCGCGUGcucGCGCAGCg- -3'
miRNA:   3'- ggCGUC-CGGuCGCGCAC---CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 88851 0.72 0.262115
Target:  5'- aCGCuGGCCAGCGCGa-GCGaCAGCc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCacCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 107512 0.72 0.262115
Target:  5'- aCGCAGGCCgcgccgaagggcAGCGCGUcGGCGgccacCAGCa- -3'
miRNA:   3'- gGCGUCCGG------------UCGCGCA-CCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 50007 0.72 0.262115
Target:  5'- gCCGCGccGCCAGCGCGcgGGCGCccAGCc- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCa-CCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 84855 0.72 0.264538
Target:  5'- aCCGCGGGCCgcguggccaugaccgAGCGCacgagGUGGCugGCGGCg- -3'
miRNA:   3'- -GGCGUCCGG---------------UCGCG-----CACCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 65803 0.72 0.268208
Target:  5'- uCCGCGGGUCGGgGUGcccgGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUCCGGUCgCGCa---CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 111588 0.72 0.268208
Target:  5'- cUCG-AGGCCgAGCacGCGgagugGGCGCGGCUGg -3'
miRNA:   3'- -GGCgUCCGG-UCG--CGCa----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117726 0.72 0.268208
Target:  5'- cCCGCAagcGGCC-GCGCGcUGGCGCcGCc- -3'
miRNA:   3'- -GGCGU---CCGGuCGCGC-ACCGCGuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.