miRNA display CGI


Results 101 - 120 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 23162 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 62517 0.66 0.541447
Target:  5'- uCUGCAGGaaGGCGCc--GCGCGGCa- -3'
miRNA:   3'- -GGCGUCCggUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 86928 0.66 0.541447
Target:  5'- aCCGCc-GCCGccGCGCGcGGCG-GGCUGg -3'
miRNA:   3'- -GGCGucCGGU--CGCGCaCCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 100192 0.66 0.541447
Target:  5'- gCgGCGGGgCAGCGUGgcGGCcaGCAGCc- -3'
miRNA:   3'- -GgCGUCCgGUCGCGCa-CCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 127680 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 4390 0.66 0.541447
Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3'
miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 94540 0.66 0.541447
Target:  5'- -gGCAGGCCAGgaccuCGcCGUGGaGCcGCUGc -3'
miRNA:   3'- ggCGUCCGGUC-----GC-GCACCgCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 82797 0.66 0.541447
Target:  5'- gCCGCucggaGGGCUcGCG-GUGGCGcCAGCc- -3'
miRNA:   3'- -GGCG-----UCCGGuCGCgCACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 78982 0.66 0.541447
Target:  5'- gCGUGGcGCCGGCGCccgcucucgcucGUGGCccgGCGGCa- -3'
miRNA:   3'- gGCGUC-CGGUCGCG------------CACCG---CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 90396 0.66 0.541447
Target:  5'- gCCGCgacguggaAGGCCcuguacgugAGCGCccugGUGGCGCuGCg- -3'
miRNA:   3'- -GGCG--------UCCGG---------UCGCG----CACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 19537 0.66 0.541447
Target:  5'- -aGCAGGaCCAcgccGCGCGUGcGC-CAGCg- -3'
miRNA:   3'- ggCGUCC-GGU----CGCGCAC-CGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 37598 0.66 0.541447
Target:  5'- gCGCGGGCCGcGCGCcUGuGCG-AGCg- -3'
miRNA:   3'- gGCGUCCGGU-CGCGcAC-CGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 63023 0.66 0.540485
Target:  5'- gCGCGGgcGCCGGCGCccgcggcgaggcgGUcGCGCAGCa- -3'
miRNA:   3'- gGCGUC--CGGUCGCG-------------CAcCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 10519 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 115036 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 14126 0.66 0.531854
Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3'
miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 61194 0.66 0.531854
Target:  5'- gCCGaGGGCCGcgcGCGCGgccucGGCGuCGGCg- -3'
miRNA:   3'- -GGCgUCCGGU---CGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 108019 0.66 0.531854
Target:  5'- uUCGCGccGCCAGCGCGgccgccuccaGCGCGGCg- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCac--------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 41874 0.66 0.531854
Target:  5'- gCCGCgccAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -GGCG---UCCGGUCG----CGCA--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 13974 0.66 0.531854
Target:  5'- gCGCGGG-CGGCGCc--GCGCGGCg- -3'
miRNA:   3'- gGCGUCCgGUCGCGcacCGCGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.