miRNA display CGI


Results 61 - 80 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 11908 0.68 0.448828
Target:  5'- gCCGCGGGCCcG-GCccGGCcgGCGGCUGc -3'
miRNA:   3'- -GGCGUCCGGuCgCGcaCCG--CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 12084 0.68 0.46669
Target:  5'- uCCGC--GCCGGgGCGgcucaaaGGCGCGGCg- -3'
miRNA:   3'- -GGCGucCGGUCgCGCa------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12161 0.72 0.274415
Target:  5'- cCCGCcgAGGCCGGCGgGcggcUGGCGCcggAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCgC----ACCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 12170 0.66 0.570547
Target:  5'- cCCGCacAGGCCAGCGCcGccGCcaccauGCAGCg- -3'
miRNA:   3'- -GGCG--UCCGGUCGCG-CacCG------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12296 0.68 0.44004
Target:  5'- cCCGCGccagcGGCUAccguGCGCGUGGCG-AGCc- -3'
miRNA:   3'- -GGCGU-----CCGGU----CGCGCACCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 12302 0.74 0.188232
Target:  5'- gCCGCGGGCacgGGCGCGUagccggcgGGCGCGcGCUu -3'
miRNA:   3'- -GGCGUCCGg--UCGCGCA--------CCGCGU-CGAc -5'
23561 3' -62.9 NC_005261.1 + 12642 0.66 0.551097
Target:  5'- gCGCuuucgacCCGGCGCGUGGCGUuuGCg- -3'
miRNA:   3'- gGCGucc----GGUCGCGCACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 12936 0.68 0.422762
Target:  5'- cCCGCGGGuCCGGCGCc---CGCGGcCUGa -3'
miRNA:   3'- -GGCGUCC-GGUCGCGcaccGCGUC-GAC- -5'
23561 3' -62.9 NC_005261.1 + 13293 0.68 0.44004
Target:  5'- gCGCcGGCaCAGCGCGcgcGGCGgAGCc- -3'
miRNA:   3'- gGCGuCCG-GUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 13297 0.66 0.55013
Target:  5'- gCGCAGGUguGCGaCGggGGCcucguacGCAGCg- -3'
miRNA:   3'- gGCGUCCGguCGC-GCa-CCG-------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 13339 0.72 0.256135
Target:  5'- cUCGCGcGGCCAGCG-GUcGGCGgaGGCUGg -3'
miRNA:   3'- -GGCGU-CCGGUCGCgCA-CCGCg-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 13639 0.71 0.307178
Target:  5'- gCCGCAcGCCgcccaacgaucAGCGCGUGGUGCgcgAGCg- -3'
miRNA:   3'- -GGCGUcCGG-----------UCGCGCACCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 13668 0.68 0.422762
Target:  5'- gCCGCGGGgggGGCGCGgGGCGCgcgGGCg- -3'
miRNA:   3'- -GGCGUCCgg-UCGCGCaCCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 13974 0.66 0.531854
Target:  5'- gCGCGGG-CGGCGCc--GCGCGGCg- -3'
miRNA:   3'- gGCGUCCgGUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14126 0.66 0.531854
Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3'
miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 14363 0.69 0.397627
Target:  5'- gCCGC-GGCCGGgGC--GGCGCGGUg- -3'
miRNA:   3'- -GGCGuCCGGUCgCGcaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14670 0.73 0.217363
Target:  5'- aCGgGGGCCGGCGUGUGaCGguGCg- -3'
miRNA:   3'- gGCgUCCGGUCGCGCACcGCguCGac -5'
23561 3' -62.9 NC_005261.1 + 14802 0.66 0.570547
Target:  5'- cCCGCAGGCU-GCGCacgucCGCGGCUu -3'
miRNA:   3'- -GGCGUCCGGuCGCGcacc-GCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 15019 0.67 0.484912
Target:  5'- gCgGCAGGCC-GCGCuuacGCGgCGGCUGg -3'
miRNA:   3'- -GgCGUCCGGuCGCGcac-CGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 15156 0.66 0.580335
Target:  5'- uCCGC-GGUgGGgGUG-GGCGUAGCg- -3'
miRNA:   3'- -GGCGuCCGgUCgCGCaCCGCGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.