miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 15412 0.68 0.448828
Target:  5'- gCCGCAGcGCgGGUGCuGgcgGGCGCgcGGCUc -3'
miRNA:   3'- -GGCGUC-CGgUCGCG-Ca--CCGCG--UCGAc -5'
23561 3' -62.9 NC_005261.1 + 15440 0.71 0.299721
Target:  5'- gCGCGGGCCGGCGauggagaagagcaCGUGGUucucgaccGCGGCg- -3'
miRNA:   3'- gGCGUCCGGUCGC-------------GCACCG--------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 15530 0.75 0.174994
Target:  5'- gCGC-GGCCggcGGCGCGgcgauggagcaGGCGCAGCUGa -3'
miRNA:   3'- gGCGuCCGG---UCGCGCa----------CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 15691 0.67 0.475757
Target:  5'- cCCGCAGcGCgAGCGUu--GCGuCGGCUGg -3'
miRNA:   3'- -GGCGUC-CGgUCGCGcacCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 15782 0.68 0.46669
Target:  5'- gCCGCuGGCgGGCGCcgcccGCGCGGCc- -3'
miRNA:   3'- -GGCGuCCGgUCGCGcac--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 16063 0.67 0.475757
Target:  5'- cCCGCGccGaGCCGGCGCGUGuagacgaaguacGCGgCGGCa- -3'
miRNA:   3'- -GGCGU--C-CGGUCGCGCAC------------CGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 16159 0.68 0.414278
Target:  5'- aCCgGCAGGgCAGUagggggcgcggGCGUGGCGgGGgUGg -3'
miRNA:   3'- -GG-CGUCCgGUCG-----------CGCACCGCgUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 16262 0.66 0.580335
Target:  5'- -gGCGGcGCUggAGCGCGgcacGGCG-AGCUGg -3'
miRNA:   3'- ggCGUC-CGG--UCGCGCa---CCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 16384 0.67 0.475757
Target:  5'- gCCGCGGGCUgcuGGCGCcgGUGcGCcgccGCGGCg- -3'
miRNA:   3'- -GGCGUCCGG---UCGCG--CAC-CG----CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 17001 0.7 0.350333
Target:  5'- -aGCuGGCCGGCGCcauGCGguGCUGc -3'
miRNA:   3'- ggCGuCCGGUCGCGcacCGCguCGAC- -5'
23561 3' -62.9 NC_005261.1 + 17137 0.66 0.560799
Target:  5'- cCCGCAcGGCCuggaGGCGC-UGGCGgccgcCGGCg- -3'
miRNA:   3'- -GGCGU-CCGG----UCGCGcACCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 17167 0.67 0.522324
Target:  5'- cCCGCGGcGCgGGCGUG-GGCagcccugccGCGGCg- -3'
miRNA:   3'- -GGCGUC-CGgUCGCGCaCCG---------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 17552 0.67 0.483993
Target:  5'- gCGCGGGCCcgccguucGGCG-GUGGCcuugcggGCgAGCUGg -3'
miRNA:   3'- gGCGUCCGG--------UCGCgCACCG-------CG-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 17836 0.69 0.389464
Target:  5'- gCGCAGacGCCGcucugcucgguGCGCGagGGCGCGGCg- -3'
miRNA:   3'- gGCGUC--CGGU-----------CGCGCa-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 18047 0.7 0.335482
Target:  5'- gCGCAGGuUgGGCGgGUGG-GCGGUUGg -3'
miRNA:   3'- gGCGUCC-GgUCGCgCACCgCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 18185 0.68 0.422762
Target:  5'- gCGCAGGCgcguggagcgCGGCGgGUaguacucggcGGCGCGGCa- -3'
miRNA:   3'- gGCGUCCG----------GUCGCgCA----------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 18438 0.66 0.580335
Target:  5'- cUCGCcGGgCAGCGCGUuccccGUGCAGUUa -3'
miRNA:   3'- -GGCGuCCgGUCGCGCAc----CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 19019 0.67 0.51286
Target:  5'- -aGguGGUCAGCGuCGcGGgGCAGCc- -3'
miRNA:   3'- ggCguCCGGUCGC-GCaCCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 19069 0.67 0.484912
Target:  5'- gCUGCGcGGCUcucGGCGCGUGcuuGCGUGGCg- -3'
miRNA:   3'- -GGCGU-CCGG---UCGCGCAC---CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 19109 0.66 0.570547
Target:  5'- uUGCGGGUCAGC-CGgucGGUGgGGCUa -3'
miRNA:   3'- gGCGUCCGGUCGcGCa--CCGCgUCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.