miRNA display CGI


Results 121 - 140 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 21580 0.69 0.365645
Target:  5'- -aGCAGGUCGGCgGCG-GGCGC-GCg- -3'
miRNA:   3'- ggCGUCCGGUCG-CGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 21616 0.66 0.551097
Target:  5'- uCgGCGGGCgggCGGUGCGagGGCuGCGGCa- -3'
miRNA:   3'- -GgCGUCCG---GUCGCGCa-CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 21822 0.71 0.307178
Target:  5'- cCCGC-GGCgGGCGCGcgugcgGGCgggcucgccccGCAGCUGa -3'
miRNA:   3'- -GGCGuCCGgUCGCGCa-----CCG-----------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 22394 0.7 0.320389
Target:  5'- gCGCGGGCCAaCGCGcccaagcUGGCGCAccGCg- -3'
miRNA:   3'- gGCGUCCGGUcGCGC-------ACCGCGU--CGac -5'
23561 3' -62.9 NC_005261.1 + 22724 0.69 0.389464
Target:  5'- gCCGgAGGaCCAGCGCcagucgGGCGCGGg-- -3'
miRNA:   3'- -GGCgUCC-GGUCGCGca----CCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 22802 0.66 0.570547
Target:  5'- gUCGC-GGCCGGCG-GcGGCGCuGCc- -3'
miRNA:   3'- -GGCGuCCGGUCGCgCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 23043 0.68 0.421909
Target:  5'- gCGCuGGGCCgugcugaAGCGCGUGcccaucGCGCAGgaGg -3'
miRNA:   3'- gGCG-UCCGG-------UCGCGCAC------CGCGUCgaC- -5'
23561 3' -62.9 NC_005261.1 + 23162 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 23210 0.68 0.422762
Target:  5'- cCCGCAgcggcGGCC-GCGCGcaaaagccGGUGCAGCg- -3'
miRNA:   3'- -GGCGU-----CCGGuCGCGCa-------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 23321 0.69 0.405899
Target:  5'- -aGCAGaaagaaGCCgacgAGCGCGcGGCGCAGCg- -3'
miRNA:   3'- ggCGUC------CGG----UCGCGCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 23618 0.68 0.448828
Target:  5'- gCCGCu-GCCGGgGCGcGGCgggggucggGCGGCUGg -3'
miRNA:   3'- -GGCGucCGGUCgCGCaCCG---------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 23888 0.68 0.43135
Target:  5'- -gGCGGGCCGGCuaGgGUGGgcuCGCugGGCUGg -3'
miRNA:   3'- ggCGUCCGGUCG--CgCACC---GCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 23986 0.71 0.280736
Target:  5'- -gGCGGGCUAGuCGCGgcgGaGCGCuGCUGc -3'
miRNA:   3'- ggCGUCCGGUC-GCGCa--C-CGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 26312 0.72 0.238865
Target:  5'- aCUGCAGGCCgAGCGCGcacaGG-GCGGCg- -3'
miRNA:   3'- -GGCGUCCGG-UCGCGCa---CCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 26815 0.66 0.560799
Target:  5'- uUGCccGCCGGCGUGUGGCccgcccguccGCuAGCUa -3'
miRNA:   3'- gGCGucCGGUCGCGCACCG----------CG-UCGAc -5'
23561 3' -62.9 NC_005261.1 + 27293 0.66 0.541447
Target:  5'- gCCGCcGGgCGGCGCucgGUGcccaGCGCGGCa- -3'
miRNA:   3'- -GGCGuCCgGUCGCG---CAC----CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 27504 0.7 0.342849
Target:  5'- aCCGcCAGGUCuGgGCG-GGC-CAGCUGg -3'
miRNA:   3'- -GGC-GUCCGGuCgCGCaCCGcGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 27652 0.73 0.217363
Target:  5'- gCGCAGGCCGGCaCGUGggccguggaGCGCGGgUGu -3'
miRNA:   3'- gGCGUCCGGUCGcGCAC---------CGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 27739 0.7 0.357166
Target:  5'- aCGCuGGCCAGCuuguccuGCGUGGUccacgagaGCAGCc- -3'
miRNA:   3'- gGCGuCCGGUCG-------CGCACCG--------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 27897 0.69 0.364868
Target:  5'- gUGCGcGCgCAGCGCGUccgcggcGGCGCGGUUGc -3'
miRNA:   3'- gGCGUcCG-GUCGCGCA-------CCGCGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.