miRNA display CGI


Results 61 - 80 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 126339 0.71 0.307178
Target:  5'- cCCGC-GGCgGGCGCGcgugcgGGCgggcucgccccGCAGCUGa -3'
miRNA:   3'- -GGCGuCCGgUCGCGCa-----CCG-----------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 126103 0.72 0.268208
Target:  5'- gCCGCGgcGGCgGGCGCcauccUGGCGCuagAGCUGg -3'
miRNA:   3'- -GGCGU--CCGgUCGCGc----ACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 125900 0.67 0.503467
Target:  5'- gCGCcuGaGCCAGaUGUGUGGCGgGGCUc -3'
miRNA:   3'- gGCGu-C-CGGUC-GCGCACCGCgUCGAc -5'
23561 3' -62.9 NC_005261.1 + 125158 0.67 0.49415
Target:  5'- gCCGaCGGGCCGGCGgacgcgccCGgcaggGGCGCGcGCg- -3'
miRNA:   3'- -GGC-GUCCGGUCGC--------GCa----CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 124898 0.71 0.307178
Target:  5'- aCCGCuGGCCgcgcgAGUGCGagGGCGCuGCg- -3'
miRNA:   3'- -GGCGuCCGG-----UCGCGCa-CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 124246 0.72 0.268208
Target:  5'- gCCGCGGGCaGGCGCc--GCGCGGCg- -3'
miRNA:   3'- -GGCGUCCGgUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 124204 0.67 0.522324
Target:  5'- uCCGguGGCguGaacuGCGUGGCugccaGCAGCc- -3'
miRNA:   3'- -GGCguCCGguCg---CGCACCG-----CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 124079 0.66 0.570547
Target:  5'- aCUGCAGcCCGGCGCcc-GCGUAGCg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 123860 0.71 0.314079
Target:  5'- aUGCGGGCCAcCGCGccgccccGGcCGCGGCUGc -3'
miRNA:   3'- gGCGUCCGGUcGCGCa------CC-GCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 123250 0.73 0.217363
Target:  5'- gCGC-GGCCGGCGCGgccGCGCAGUc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 123164 0.71 0.293725
Target:  5'- -gGCgGGGCgGGCGCGcgGGCGUgguGGCUGg -3'
miRNA:   3'- ggCG-UCCGgUCGCGCa-CCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 122639 0.66 0.551097
Target:  5'- gCGCgAGGcCCGGCGCGcguacgugGGCGCgaagAGCa- -3'
miRNA:   3'- gGCG-UCC-GGUCGCGCa-------CCGCG----UCGac -5'
23561 3' -62.9 NC_005261.1 + 122440 0.67 0.49415
Target:  5'- gCGCuGGCC-GCGCGggcGGCGCccgccAGCg- -3'
miRNA:   3'- gGCGuCCGGuCGCGCa--CCGCG-----UCGac -5'
23561 3' -62.9 NC_005261.1 + 122316 0.69 0.397627
Target:  5'- aCGCccGGGCCGGCGgucagGUGGCGCucGCa- -3'
miRNA:   3'- gGCG--UCCGGUCGCg----CACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 121825 0.7 0.357931
Target:  5'- uCUGCGGGCCGcCGCGgcGGCGCaccGGCg- -3'
miRNA:   3'- -GGCGUCCGGUcGCGCa-CCGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 121785 0.72 0.244511
Target:  5'- gCCGC-GGCCGGCGgGcugggcagggGGCGCguGGCUGg -3'
miRNA:   3'- -GGCGuCCGGUCGCgCa---------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 121656 0.69 0.373472
Target:  5'- gCGCGGGCUgucCGCGUcGGCGUAGgUGu -3'
miRNA:   3'- gGCGUCCGGuc-GCGCA-CCGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 121259 0.68 0.43135
Target:  5'- cCCGCAGGUgGgGCGCacgcuguggGGCGCGGUg- -3'
miRNA:   3'- -GGCGUCCGgU-CGCGca-------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 121210 0.7 0.321097
Target:  5'- gCCGCGGGCCGGagacugcagcacCGCaUGGCGcCGGCc- -3'
miRNA:   3'- -GGCGUCCGGUC------------GCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 121110 0.67 0.473028
Target:  5'- gUGCGGGUCcucuagggcgcggaGGCGCG-GGCGCgAGCg- -3'
miRNA:   3'- gGCGUCCGG--------------UCGCGCaCCGCG-UCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.