miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 120650 0.66 0.551097
Target:  5'- cCUGCGGcGCaaGGCGCG-GGCGCGcCUGu -3'
miRNA:   3'- -GGCGUC-CGg-UCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 120604 0.69 0.397627
Target:  5'- cCUGC-GGCCucGGCGcCGUGGgGCuccuGCUGg -3'
miRNA:   3'- -GGCGuCCGG--UCGC-GCACCgCGu---CGAC- -5'
23561 3' -62.9 NC_005261.1 + 119122 0.67 0.475757
Target:  5'- aUGUAGGCCgcGGC-CGcGGCGCGGCc- -3'
miRNA:   3'- gGCGUCCGG--UCGcGCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 119034 0.66 0.551097
Target:  5'- -aGCGGGCCuGgGCGaaGGCgacugcgcccgGCAGCUGc -3'
miRNA:   3'- ggCGUCCGGuCgCGCa-CCG-----------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 118926 0.81 0.06684
Target:  5'- gCCGCGGGCgCGGCGCc--GCGCGGCUGg -3'
miRNA:   3'- -GGCGUCCG-GUCGCGcacCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 118868 0.7 0.328231
Target:  5'- cCCGCGgcccuggccucGGCCAcCGCG-GGCGC-GCUGg -3'
miRNA:   3'- -GGCGU-----------CCGGUcGCGCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 118809 0.67 0.51286
Target:  5'- aCGUGGGCgucuGCGCccugGGCGCGGCa- -3'
miRNA:   3'- gGCGUCCGgu--CGCGca--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 118191 0.68 0.46669
Target:  5'- gCCGCGGGCCccGCGCcUGccGCGCuGCg- -3'
miRNA:   3'- -GGCGUCCGGu-CGCGcAC--CGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 117897 0.66 0.551097
Target:  5'- gCCGCGGGCgucGCuCGU-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCCGgu-CGcGCAcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 117726 0.72 0.268208
Target:  5'- cCCGCAagcGGCC-GCGCGcUGGCGCcGCc- -3'
miRNA:   3'- -GGCGU---CCGGuCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 117650 0.72 0.274415
Target:  5'- aCGUAGGCCAcccGCGCcgccGGCGCcGCUGc -3'
miRNA:   3'- gGCGUCCGGU---CGCGca--CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117466 0.71 0.314079
Target:  5'- gCgGCAGGUCGGCgGCGacGCGCuGCUGc -3'
miRNA:   3'- -GgCGUCCGGUCG-CGCacCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117363 0.67 0.492295
Target:  5'- cCCGCaAGGCCgcccuccuggaGGCGCGcugcuucggcggGGCGCccgacuuucGGCUGg -3'
miRNA:   3'- -GGCG-UCCGG-----------UCGCGCa-----------CCGCG---------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 117058 0.67 0.475757
Target:  5'- uUCGCAGGCCAGC-C-UGGUuaAGCa- -3'
miRNA:   3'- -GGCGUCCGGUCGcGcACCGcgUCGac -5'
23561 3' -62.9 NC_005261.1 + 117019 0.67 0.521374
Target:  5'- cCCGCcgucgcggccgGGGCCAGCGUccGcGGCcgcgcucgcgccaGCGGCUGc -3'
miRNA:   3'- -GGCG-----------UCCGGUCGCG--CaCCG-------------CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 116817 0.7 0.357931
Target:  5'- aCUGCAccGGCCGGCGC--GGCGCGGg-- -3'
miRNA:   3'- -GGCGU--CCGGUCGCGcaCCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 116481 0.66 0.560799
Target:  5'- gCGCGGGCgGG-GCG-GGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGgUCgCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 116464 0.7 0.321097
Target:  5'- gCCGCGGcggcucgcCCGGCGCGcgcuccaGGCGCAGCa- -3'
miRNA:   3'- -GGCGUCc-------GGUCGCGCa------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 116425 0.68 0.448828
Target:  5'- gCCGCGGGCCcG-GCccGGCcgGCGGCUGc -3'
miRNA:   3'- -GGCGUCCGGuCgCGcaCCG--CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 116360 0.68 0.414278
Target:  5'- cCCGCGGGCgCgcguucgcgAGCGCGa-GCGuCAGCUGc -3'
miRNA:   3'- -GGCGUCCG-G---------UCGCGCacCGC-GUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.