miRNA display CGI


Results 101 - 120 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 115982 0.68 0.414278
Target:  5'- -aGCGGaGCgGGCGCGgaggGGCGgGGCg- -3'
miRNA:   3'- ggCGUC-CGgUCGCGCa---CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 115738 0.66 0.580335
Target:  5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3'
miRNA:   3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 115610 0.68 0.44004
Target:  5'- cCCaGCgAGGCCAGCacgucGCGgcaGCGCAGCg- -3'
miRNA:   3'- -GG-CG-UCCGGUCG-----CGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 115481 0.68 0.422762
Target:  5'- gUCGCGGGCuCGGcCGCGgcGGCGCGccGCa- -3'
miRNA:   3'- -GGCGUCCG-GUC-GCGCa-CCGCGU--CGac -5'
23561 3' -62.9 NC_005261.1 + 115412 0.67 0.475757
Target:  5'- aCCGCGGGCggCAGC-CGgGGCcGCGGCc- -3'
miRNA:   3'- -GGCGUCCG--GUCGcGCaCCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 115287 0.66 0.580335
Target:  5'- aCGCGGGCagCAGCcgcaacGCGUcGGCGCAcGuCUGc -3'
miRNA:   3'- gGCGUCCG--GUCG------CGCA-CCGCGU-C-GAC- -5'
23561 3' -62.9 NC_005261.1 + 115036 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 114995 0.66 0.55013
Target:  5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3'
miRNA:   3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 114330 0.7 0.342107
Target:  5'- gCGCaAGGUggacuggcucgagCGGCGCGUGGCcGCGGCc- -3'
miRNA:   3'- gGCG-UCCG-------------GUCGCGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 113900 0.7 0.357931
Target:  5'- aCGC-GGCgGGCGCGaUGGCcgagGCAGCg- -3'
miRNA:   3'- gGCGuCCGgUCGCGC-ACCG----CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 113526 0.68 0.448828
Target:  5'- gCGCgAGGCCAGCcggcucgggGcCGUGcGCGC-GCUGg -3'
miRNA:   3'- gGCG-UCCGGUCG---------C-GCAC-CGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 113307 0.69 0.381412
Target:  5'- gCCGCGGGCCugggcccggcuGCGCGagaaggucGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGu----------CGCGCac------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 113036 0.75 0.170769
Target:  5'- -aGCGGGCC-GCGCGcGGCGUGGCg- -3'
miRNA:   3'- ggCGUCCGGuCGCGCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 112172 0.7 0.357931
Target:  5'- uUCGCcGGCCGcGCGCGgggcucgcUGGC-CAGCUGc -3'
miRNA:   3'- -GGCGuCCGGU-CGCGC--------ACCGcGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 111722 0.68 0.43135
Target:  5'- gUCGCGGGUCgacgAGCGCGUGuacgugaagugcGgGCAGCUc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCAC------------CgCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 111588 0.72 0.268208
Target:  5'- cUCG-AGGCCgAGCacGCGgagugGGCGCGGCUGg -3'
miRNA:   3'- -GGCgUCCGG-UCG--CGCa----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 110503 0.67 0.519477
Target:  5'- -aGCuGGCCAGCGUcacggccgucgucuGcggGGCGCAGgaGg -3'
miRNA:   3'- ggCGuCCGGUCGCG--------------Ca--CCGCGUCgaC- -5'
23561 3' -62.9 NC_005261.1 + 110230 0.68 0.46669
Target:  5'- aCGCcu-CCAGCGUGggcGGCGCGGCg- -3'
miRNA:   3'- gGCGuccGGUCGCGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 109882 0.68 0.448828
Target:  5'- cCCGCGGGCgGGCGCcccggGGCuaCAGCc- -3'
miRNA:   3'- -GGCGUCCGgUCGCGca---CCGc-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 109793 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.