miRNA display CGI


Results 121 - 140 of 791 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 109193 0.69 0.397627
Target:  5'- gCCGCgucGGGCguGCGCaggcgcucGUaGGCGCGGCa- -3'
miRNA:   3'- -GGCG---UCCGguCGCG--------CA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 109087 0.68 0.44004
Target:  5'- uCCGCGGGCgGGUccgGCGgGGCGCcccccGGCg- -3'
miRNA:   3'- -GGCGUCCGgUCG---CGCaCCGCG-----UCGac -5'
23561 3' -62.9 NC_005261.1 + 109019 0.68 0.426185
Target:  5'- gCGCGGGCCccagucgcgcgcccGCGCG-GGCGCcGCg- -3'
miRNA:   3'- gGCGUCCGGu-------------CGCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 108907 0.66 0.541447
Target:  5'- gCGCAcgcGGCCGG-GCGgcggcGGCGC-GCUGc -3'
miRNA:   3'- gGCGU---CCGGUCgCGCa----CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 108812 0.69 0.365645
Target:  5'- gCCGCGGGCCccgcGGCcgccGCGUaGcGCGCGGCc- -3'
miRNA:   3'- -GGCGUCCGG----UCG----CGCA-C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108732 0.75 0.174994
Target:  5'- gCGCGGGCCAGCG-GcGGCGCcGCg- -3'
miRNA:   3'- gGCGUCCGGUCGCgCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 108556 0.67 0.49415
Target:  5'- gCgGCAGcGCCcacAGCGCGUucuGCGCGGCc- -3'
miRNA:   3'- -GgCGUC-CGG---UCGCGCAc--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108381 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 108345 0.79 0.088818
Target:  5'- gCCGCGGGCCcgGGCGC-UGGCGgCAGCg- -3'
miRNA:   3'- -GGCGUCCGG--UCGCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 108160 0.66 0.530899
Target:  5'- cCUGCAGcgcguccGCCagGGCGCGcGGCcGCGGCUc -3'
miRNA:   3'- -GGCGUC-------CGG--UCGCGCaCCG-CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 108054 0.75 0.158637
Target:  5'- gCCGCcucGGcGCgCAGCGCGgcgGGCGCGGCg- -3'
miRNA:   3'- -GGCG---UC-CG-GUCGCGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108019 0.66 0.531854
Target:  5'- uUCGCGccGCCAGCGCGgccgccuccaGCGCGGCg- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCac--------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 107946 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 107746 0.68 0.46669
Target:  5'- gCCGCGGGgggggccacgccCCAGCGCucgcUGGCGC-GCg- -3'
miRNA:   3'- -GGCGUCC------------GGUCGCGc---ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 107600 0.69 0.397627
Target:  5'- cCCGCAGGaCGGCaGCG-GGCaCAGCg- -3'
miRNA:   3'- -GGCGUCCgGUCG-CGCaCCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 107512 0.72 0.262115
Target:  5'- aCGCAGGCCgcgccgaagggcAGCGCGUcGGCGgccacCAGCa- -3'
miRNA:   3'- gGCGUCCGG------------UCGCGCA-CCGC-----GUCGac -5'
23561 3' -62.9 NC_005261.1 + 107255 0.66 0.570547
Target:  5'- cCCGCGGGC--GCGCGggcacgggcgGGCGC-GCa- -3'
miRNA:   3'- -GGCGUCCGguCGCGCa---------CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 107149 0.68 0.457712
Target:  5'- gCCGCGgccauggaggcGGCCAGCGCcuccgucucgGcGGCGUAGCc- -3'
miRNA:   3'- -GGCGU-----------CCGGUCGCG----------CaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 107068 0.67 0.493222
Target:  5'- gCCGCGGcGCUgggcgcgGGCGUGUGGUacuccccggGCGGCa- -3'
miRNA:   3'- -GGCGUC-CGG-------UCGCGCACCG---------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106927 0.69 0.365645
Target:  5'- cCCGCGGGCCccGCGCGgcGGCG-GGCc- -3'
miRNA:   3'- -GGCGUCCGGu-CGCGCa-CCGCgUCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.