miRNA display CGI


Results 141 - 160 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 106892 0.67 0.522324
Target:  5'- cCUGCAGcGCCuGCGuCGUccgcgccgcGGCGC-GCUGc -3'
miRNA:   3'- -GGCGUC-CGGuCGC-GCA---------CCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 106802 0.7 0.342107
Target:  5'- cCCGCAccagcgccgaguGGCCcgccagcAGCGCGUGGUGC-GCg- -3'
miRNA:   3'- -GGCGU------------CCGG-------UCGCGCACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 106600 0.66 0.580335
Target:  5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3'
miRNA:   3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106553 0.69 0.379018
Target:  5'- gCCGCguccGGGCCGGCGCGcgccGGCcccggggccgccgcGCGGCg- -3'
miRNA:   3'- -GGCG----UCCGGUCGCGCa---CCG--------------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106425 0.82 0.057164
Target:  5'- gCCGCucAGGCCAGCGCGcGGCGCA-CUGc -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 106392 0.67 0.475757
Target:  5'- gCCGCgAGGCCAGCaCGgcgcGCGcCAGCg- -3'
miRNA:   3'- -GGCG-UCCGGUCGcGCac--CGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 106261 0.78 0.106219
Target:  5'- gCGCGGGCCcaGGCGCGUGGCcaccguGUAGCg- -3'
miRNA:   3'- gGCGUCCGG--UCGCGCACCG------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106169 0.68 0.413435
Target:  5'- uCCGCgcuaauacuagggGGcGCCGcGCGCGUGGCGCcGUUu -3'
miRNA:   3'- -GGCG-------------UC-CGGU-CGCGCACCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 106106 0.67 0.475757
Target:  5'- aCGUcGGCCGGCGuCGccGGCGCGcGCg- -3'
miRNA:   3'- gGCGuCCGGUCGC-GCa-CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 106063 0.7 0.350333
Target:  5'- cCCGCAGGCCAG-GUacaccGGCcGCAGCg- -3'
miRNA:   3'- -GGCGUCCGGUCgCGca---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 106019 0.68 0.43135
Target:  5'- gCCGC-GGCCGGCaGCucgucgGGCGcCAGCUc -3'
miRNA:   3'- -GGCGuCCGGUCG-CGca----CCGC-GUCGAc -5'
23561 3' -62.9 NC_005261.1 + 105920 0.67 0.49415
Target:  5'- gCCGC-GGCCgcGGCgGCGgcgGGgGCGGCg- -3'
miRNA:   3'- -GGCGuCCGG--UCG-CGCa--CCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 105700 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 105361 0.72 0.250267
Target:  5'- -gGCAGGCCGugacaggcggcGCGCGcgGGUGCGcGCUGa -3'
miRNA:   3'- ggCGUCCGGU-----------CGCGCa-CCGCGU-CGAC- -5'
23561 3' -62.9 NC_005261.1 + 105129 0.69 0.397627
Target:  5'- gCGCGGGCCgccGGCGCGcgcaGGUccucGCGGCUc -3'
miRNA:   3'- gGCGUCCGG---UCGCGCa---CCG----CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 105042 0.67 0.475757
Target:  5'- gCGCGGGCgGGCGgGgGGCagggcggacgGCGGCUc -3'
miRNA:   3'- gGCGUCCGgUCGCgCaCCG----------CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 104978 0.75 0.170769
Target:  5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3'
miRNA:   3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 104865 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 104784 0.67 0.49415
Target:  5'- gCUGCGGGgCGGCuGCGgcggcggcugcGGCGgCGGCUGc -3'
miRNA:   3'- -GGCGUCCgGUCG-CGCa----------CCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 104747 0.68 0.414278
Target:  5'- cUCGCGGGCCc-CGCGagcgGGCcCGGCUGc -3'
miRNA:   3'- -GGCGUCCGGucGCGCa---CCGcGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.