miRNA display CGI


Results 81 - 100 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 33391 0.73 0.207247
Target:  5'- cCCGCGcGGUC--CGCGUGGCGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGGucGCGCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 55002 0.73 0.212253
Target:  5'- uCCGUGGGCCGGCGacUGGCGCuguGCa- -3'
miRNA:   3'- -GGCGUCCGGUCGCgcACCGCGu--CGac -5'
23561 3' -62.9 NC_005261.1 + 107946 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 27652 0.73 0.217363
Target:  5'- gCGCAGGCCGGCaCGUGggccguggaGCGCGGgUGu -3'
miRNA:   3'- gGCGUCCGGUCGcGCAC---------CGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 61446 0.73 0.217363
Target:  5'- gCGCGGcGCCAGCGCGggGGCGUccGCg- -3'
miRNA:   3'- gGCGUC-CGGUCGCGCa-CCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 123250 0.73 0.217363
Target:  5'- gCGC-GGCCGGCGCGgccGCGCAGUc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14670 0.73 0.217363
Target:  5'- aCGgGGGCCGGCGUGUGaCGguGCg- -3'
miRNA:   3'- gGCgUCCGGUCGCGCACcGCguCGac -5'
23561 3' -62.9 NC_005261.1 + 85257 0.74 0.19754
Target:  5'- cCCGCcuGCCGGCGCcgcaccGGCGCGGCg- -3'
miRNA:   3'- -GGCGucCGGUCGCGca----CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4348 0.74 0.19754
Target:  5'- gCCGCGGGCUuGCGCagaccacagGUaGGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCG---------CA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 42434 0.74 0.192837
Target:  5'- cCCGCcGGCgcgcggcuagCAGCGCGccGGCGCAGCg- -3'
miRNA:   3'- -GGCGuCCG----------GUCGCGCa-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 38516 0.74 0.183724
Target:  5'- aCGC-GGCCAcGCGCGcgaccgUGGCGgAGCUGg -3'
miRNA:   3'- gGCGuCCGGU-CGCGC------ACCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 75165 0.74 0.183724
Target:  5'- gCCGCuguGcGCCAGCGaCGcGGCGCuGCUGc -3'
miRNA:   3'- -GGCGu--C-CGGUCGC-GCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 75208 0.74 0.183724
Target:  5'- gCCGCGGgcGCCGGCGCccgcgcgGGCGCGGCc- -3'
miRNA:   3'- -GGCGUC--CGGUCGCGca-----CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79971 0.74 0.183724
Target:  5'- gCGC-GGCgAGCGCGgcgcGGCGCGGCa- -3'
miRNA:   3'- gGCGuCCGgUCGCGCa---CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 34797 0.74 0.188232
Target:  5'- aCCGCgAGGCgCGcgcGCGCGUGGCcGCGGCc- -3'
miRNA:   3'- -GGCG-UCCG-GU---CGCGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79875 0.74 0.188232
Target:  5'- gCCGCAcaccuggacuGGCCGGCGCGgcuccgcgaGGCGguGCUc -3'
miRNA:   3'- -GGCGU----------CCGGUCGCGCa--------CCGCguCGAc -5'
23561 3' -62.9 NC_005261.1 + 79456 0.74 0.188232
Target:  5'- gCGCuGGCCGGCGCGcugggGGCGCucucGGCg- -3'
miRNA:   3'- gGCGuCCGGUCGCGCa----CCGCG----UCGac -5'
23561 3' -62.9 NC_005261.1 + 5206 0.74 0.192837
Target:  5'- gCGCGGuggcgcGCCcGCGgGUGGCGCAGCg- -3'
miRNA:   3'- gGCGUC------CGGuCGCgCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 19294 0.74 0.192837
Target:  5'- gCCGC-GGCCAGcCGCGcGGCGCcGCg- -3'
miRNA:   3'- -GGCGuCCGGUC-GCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 79393 0.73 0.224694
Target:  5'- gUGCGGGagacCCAGCGCGggugccuggaggacgUGGCGCGGCg- -3'
miRNA:   3'- gGCGUCC----GGUCGCGC---------------ACCGCGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.