miRNA display CGI


Results 121 - 140 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 92749 0.72 0.250267
Target:  5'- aUGCAcauGGCCGuguucagcacGCGCGUGGCGCccacguagagcAGCUGg -3'
miRNA:   3'- gGCGU---CCGGU----------CGCGCACCGCG-----------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 65500 0.72 0.254952
Target:  5'- aUGCGGGCCGcccGCGCGgacggggcggcgGGCGCGacGCUGg -3'
miRNA:   3'- gGCGUCCGGU---CGCGCa-----------CCGCGU--CGAC- -5'
23561 3' -62.9 NC_005261.1 + 68986 0.73 0.233328
Target:  5'- gCGCGGGCCAGCGCcucGGCGaaccgcccCAGCg- -3'
miRNA:   3'- gGCGUCCGGUCGCGca-CCGC--------GUCGac -5'
23561 3' -62.9 NC_005261.1 + 108381 0.73 0.233328
Target:  5'- gCCGCGcGGCCGGCGagcacgGcGCGCAGCUc -3'
miRNA:   3'- -GGCGU-CCGGUCGCgca---C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 8918 0.73 0.227899
Target:  5'- aCGCGGcGCCAGCGCa-GGCGCGGg-- -3'
miRNA:   3'- gGCGUC-CGGUCGCGcaCCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 4348 0.74 0.19754
Target:  5'- gCCGCGGGCUuGCGCagaccacagGUaGGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCG---------CA-CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 85257 0.74 0.19754
Target:  5'- cCCGCcuGCCGGCGCcgcaccGGCGCGGCg- -3'
miRNA:   3'- -GGCGucCGGUCGCGca----CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 134313 0.74 0.19754
Target:  5'- cCCGgAGGCCGGCGCcggcGGCGCgGGCg- -3'
miRNA:   3'- -GGCgUCCGGUCGCGca--CCGCG-UCGac -5'
23561 3' -62.9 NC_005261.1 + 34844 0.74 0.201858
Target:  5'- gCGCAGGCggccgCGGCGCGgcGGCGCgcggccgAGCUGg -3'
miRNA:   3'- gGCGUCCG-----GUCGCGCa-CCGCG-------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 89594 0.74 0.202343
Target:  5'- gCGgGGGCCGGCGCaGgggcggGGCGUggGGCUGg -3'
miRNA:   3'- gGCgUCCGGUCGCG-Ca-----CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 33391 0.73 0.207247
Target:  5'- cCCGCGcGGUC--CGCGUGGCGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGGucGCGCACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 55002 0.73 0.212253
Target:  5'- uCCGUGGGCCGGCGacUGGCGCuguGCa- -3'
miRNA:   3'- -GGCGUCCGGUCGCgcACCGCGu--CGac -5'
23561 3' -62.9 NC_005261.1 + 91690 0.72 0.255543
Target:  5'- gCUGCGGgacgacuGCCAGCGCGcagcggaGGCGguGCUGc -3'
miRNA:   3'- -GGCGUC-------CGGUCGCGCa------CCGCguCGAC- -5'
23561 3' -62.9 NC_005261.1 + 107946 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 27652 0.73 0.217363
Target:  5'- gCGCAGGCCGGCaCGUGggccguggaGCGCGGgUGu -3'
miRNA:   3'- gGCGUCCGGUCGcGCAC---------CGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 61446 0.73 0.217363
Target:  5'- gCGCGGcGCCAGCGCGggGGCGUccGCg- -3'
miRNA:   3'- gGCGUC-CGGUCGCGCa-CCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 123250 0.73 0.217363
Target:  5'- gCGC-GGCCGGCGCGgccGCGCAGUc- -3'
miRNA:   3'- gGCGuCCGGUCGCGCac-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14670 0.73 0.217363
Target:  5'- aCGgGGGCCGGCGUGUGaCGguGCg- -3'
miRNA:   3'- gGCgUCCGGUCGCGCACcGCguCGac -5'
23561 3' -62.9 NC_005261.1 + 79393 0.73 0.224694
Target:  5'- gUGCGGGagacCCAGCGCGggugccuggaggacgUGGCGCGGCg- -3'
miRNA:   3'- gGCGUCC----GGUCGCGC---------------ACCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 64412 0.73 0.227899
Target:  5'- -aGcCGGGCUAgGCGCG-GGCGCGGCUu -3'
miRNA:   3'- ggC-GUCCGGU-CGCGCaCCGCGUCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.