miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 84243 0.65 0.587209
Target:  5'- cUCGUccAGGUCGGgGCGcuuggcccccggcaUGGCGCAGgUGc -3'
miRNA:   3'- -GGCG--UCCGGUCgCGC--------------ACCGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 127680 0.66 0.541447
Target:  5'- -aGUGGGCCcggcaGGCGCGccgggGGCGaCAGCg- -3'
miRNA:   3'- ggCGUCCGG-----UCGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 14126 0.66 0.531854
Target:  5'- aCUGCGGuGCCGgcccugugcGCGCGcuacgcgGGCGCcgGGCUGc -3'
miRNA:   3'- -GGCGUC-CGGU---------CGCGCa------CCGCG--UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 27293 0.66 0.541447
Target:  5'- gCCGCcGGgCGGCGCucgGUGcccaGCGCGGCa- -3'
miRNA:   3'- -GGCGuCCgGUCGCG---CAC----CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 61194 0.66 0.531854
Target:  5'- gCCGaGGGCCGcgcGCGCGgccucGGCGuCGGCg- -3'
miRNA:   3'- -GGCgUCCGGU---CGCGCa----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 13974 0.66 0.531854
Target:  5'- gCGCGGG-CGGCGCc--GCGCGGCg- -3'
miRNA:   3'- gGCGUCCgGUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 99016 0.66 0.541447
Target:  5'- gCGCgaGGGCCAugGCGgcuaccGGUGCGGCUGc -3'
miRNA:   3'- gGCG--UCCGGUcgCGCa-----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 38567 0.66 0.531854
Target:  5'- gCGCGcugacgacGGUCAGCGUGcUGGCGC-GCa- -3'
miRNA:   3'- gGCGU--------CCGGUCGCGC-ACCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 19537 0.66 0.541447
Target:  5'- -aGCAGGaCCAcgccGCGCGUGcGC-CAGCg- -3'
miRNA:   3'- ggCGUCC-GGU----CGCGCAC-CGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 94540 0.66 0.541447
Target:  5'- -gGCAGGCCAGgaccuCGcCGUGGaGCcGCUGc -3'
miRNA:   3'- ggCGUCCGGUC-----GC-GCACCgCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 136241 0.66 0.531854
Target:  5'- cCCGCGaacuGGCC-GCGCGaUGGCcCGGCc- -3'
miRNA:   3'- -GGCGU----CCGGuCGCGC-ACCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 41874 0.66 0.531854
Target:  5'- gCCGCgccAGGCCAGUcaggGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -GGCG---UCCGGUCG----CGCA--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 115036 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 38141 0.66 0.531854
Target:  5'- gCgGCAGcGgCGGCgGCGaggGGCGCGGCg- -3'
miRNA:   3'- -GgCGUC-CgGUCG-CGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 78982 0.66 0.541447
Target:  5'- gCGUGGcGCCGGCGCccgcucucgcucGUGGCccgGCGGCa- -3'
miRNA:   3'- gGCGUC-CGGUCGCG------------CACCG---CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 37598 0.66 0.541447
Target:  5'- gCGCGGGCCGcGCGCcUGuGCG-AGCg- -3'
miRNA:   3'- gGCGUCCGGU-CGCGcAC-CGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 79486 0.66 0.541447
Target:  5'- nCGCGGGaguuucuuaaCAGCGCGcucuGCGCGGCg- -3'
miRNA:   3'- gGCGUCCg---------GUCGCGCac--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108019 0.66 0.531854
Target:  5'- uUCGCGccGCCAGCGCGgccgccuccaGCGCGGCg- -3'
miRNA:   3'- -GGCGUc-CGGUCGCGCac--------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 4856 0.66 0.530899
Target:  5'- cCCGUGGGCC-GCGCGcagGcagccgaagcccuGCGCGGCa- -3'
miRNA:   3'- -GGCGUCCGGuCGCGCa--C-------------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 45371 0.66 0.541447
Target:  5'- aCCGCGGGa-GGUGCGgccgGGCccgGgAGCUGg -3'
miRNA:   3'- -GGCGUCCggUCGCGCa---CCG---CgUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.