miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 129188 1.08 0.000657
Target:  5'- gCCGCAGGCCAGCGCGUGGCGCAGCUGc -3'
miRNA:   3'- -GGCGUCCGGUCGCGCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 11770 0.9 0.014418
Target:  5'- aCCGCgAGGCgAGCGCGcUGGCGCGGCUGg -3'
miRNA:   3'- -GGCG-UCCGgUCGCGC-ACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 31097 0.86 0.025032
Target:  5'- gCCGCGGccgugggcgccgucGCCGGCGCgGUGGCGCGGCUGg -3'
miRNA:   3'- -GGCGUC--------------CGGUCGCG-CACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 7446 0.84 0.036566
Target:  5'- uCCGCGgugcGGCCAGCGCGgGGCGcCAGCUGc -3'
miRNA:   3'- -GGCGU----CCGGUCGCGCaCCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 131759 0.82 0.05015
Target:  5'- aCGCcGGCCGGCGCGgcgGGCGCGccGCUGg -3'
miRNA:   3'- gGCGuCCGGUCGCGCa--CCGCGU--CGAC- -5'
23561 3' -62.9 NC_005261.1 + 106425 0.82 0.057164
Target:  5'- gCCGCucAGGCCAGCGCGcGGCGCA-CUGc -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 1908 0.82 0.057164
Target:  5'- gCCGCucAGGCCAGCGCGcGGCGCA-CUGc -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 58484 0.81 0.060228
Target:  5'- gCCGCAGGCCGGCGCGcggccgcuuuUGGCGCccGCg- -3'
miRNA:   3'- -GGCGUCCGGUCGCGC----------ACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 118926 0.81 0.06684
Target:  5'- gCCGCGGGCgCGGCGCc--GCGCGGCUGg -3'
miRNA:   3'- -GGCGUCCG-GUCGCGcacCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 36501 0.8 0.072252
Target:  5'- -aGCgAGGCCcugaucgcgGGCGCGcUGGCGCAGCUGg -3'
miRNA:   3'- ggCG-UCCGG---------UCGCGC-ACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 39879 0.8 0.074148
Target:  5'- gCCaGCAGGCCGcGCGCGcGGCuguGCAGCUGg -3'
miRNA:   3'- -GG-CGUCCGGU-CGCGCaCCG---CGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 75645 0.8 0.076092
Target:  5'- aCCGCGcGGCCGGCGCGUuccuGGCGCGcGCg- -3'
miRNA:   3'- -GGCGU-CCGGUCGCGCA----CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 101464 0.79 0.080127
Target:  5'- aCGCacGGGCCGGCGUGcaggGGCGCcAGCUGg -3'
miRNA:   3'- gGCG--UCCGGUCGCGCa---CCGCG-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 3828 0.79 0.088818
Target:  5'- gCCGCGGGCCcgGGCGC-UGGCGgCAGCg- -3'
miRNA:   3'- -GGCGUCCGG--UCGCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 108345 0.79 0.088818
Target:  5'- gCCGCGGGCCcgGGCGC-UGGCGgCAGCg- -3'
miRNA:   3'- -GGCGUCCGG--UCGCGcACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 65192 0.78 0.100944
Target:  5'- gCGCGGGg-GGCGCGUGGCGCgacGGCUGg -3'
miRNA:   3'- gGCGUCCggUCGCGCACCGCG---UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 30715 0.78 0.10355
Target:  5'- aCGCGcugcccuucGGCgCGGCcuGCGUGGCGCAGCUGc -3'
miRNA:   3'- gGCGU---------CCG-GUCG--CGCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 29825 0.78 0.10355
Target:  5'- aCGCAGGC--GCG-GUGGCGCGGCUGc -3'
miRNA:   3'- gGCGUCCGguCGCgCACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 38112 0.78 0.10355
Target:  5'- gCUGC-GGCCGGUGCG-GGCGCcGCUGg -3'
miRNA:   3'- -GGCGuCCGGUCGCGCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 106261 0.78 0.106219
Target:  5'- gCGCGGGCCcaGGCGCGUGGCcaccguGUAGCg- -3'
miRNA:   3'- gGCGUCCGG--UCGCGCACCG------CGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.