miRNA display CGI


Results 1 - 20 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 153 0.67 0.475757
Target:  5'- -gGCAgGGCUGGCGgaGuUGGCGgGGCUGg -3'
miRNA:   3'- ggCGU-CCGGUCGCg-C-ACCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 229 0.68 0.414278
Target:  5'- cUCGCGGGCCc-CGCGagcgGGCcCGGCUGc -3'
miRNA:   3'- -GGCGUCCGGucGCGCa---CCGcGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 348 0.72 0.256135
Target:  5'- cCCGCAGcCCGGCGCGgcccGGCgGCGGUg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGCa---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 436 0.72 0.274415
Target:  5'- -gGCGGcGCCGGCGCGggcGGCGgGGCc- -3'
miRNA:   3'- ggCGUC-CGGUCGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 461 0.75 0.170769
Target:  5'- gCCGCGacGGCCGGCGgGaUGGCGCGGg-- -3'
miRNA:   3'- -GGCGU--CCGGUCGCgC-ACCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 525 0.67 0.475757
Target:  5'- gCGCGGGCgGGCGgGgGGCagggcggacgGCGGCUc -3'
miRNA:   3'- gGCGUCCGgUCGCgCaCCG----------CGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 1182 0.72 0.244511
Target:  5'- gCCGCggccgGGGCCGGgGcCG-GGCGCGGCg- -3'
miRNA:   3'- -GGCG-----UCCGGUCgC-GCaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 1403 0.67 0.49415
Target:  5'- gCCGC-GGCCgcGGCgGCGgcgGGgGCGGCg- -3'
miRNA:   3'- -GGCGuCCGG--UCG-CGCa--CCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 1502 0.68 0.43135
Target:  5'- gCCGC-GGCCGGCaGCucgucgGGCGcCAGCUc -3'
miRNA:   3'- -GGCGuCCGGUCG-CGca----CCGC-GUCGAc -5'
23561 3' -62.9 NC_005261.1 + 1546 0.7 0.350333
Target:  5'- cCCGCAGGCCAG-GUacaccGGCcGCAGCg- -3'
miRNA:   3'- -GGCGUCCGGUCgCGca---CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 1744 0.78 0.106219
Target:  5'- gCGCGGGCCcaGGCGCGUGGCcaccguGUAGCg- -3'
miRNA:   3'- gGCGUCCGG--UCGCGCACCG------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 1875 0.67 0.475757
Target:  5'- gCCGCgAGGCCAGCaCGgcgcGCGcCAGCg- -3'
miRNA:   3'- -GGCG-UCCGGUCGcGCac--CGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 1908 0.82 0.057164
Target:  5'- gCCGCucAGGCCAGCGCGcGGCGCA-CUGc -3'
miRNA:   3'- -GGCG--UCCGGUCGCGCaCCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 2082 0.66 0.580335
Target:  5'- gCCGCggaAGGCCAGguccCGCGUcGCgaGCAGCa- -3'
miRNA:   3'- -GGCG---UCCGGUC----GCGCAcCG--CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 2356 0.68 0.457712
Target:  5'- gCCGCAGGCCugcuuGUGCGUguccaaGGCGUcgaugaAGCc- -3'
miRNA:   3'- -GGCGUCCGGu----CGCGCA------CCGCG------UCGac -5'
23561 3' -62.9 NC_005261.1 + 2410 0.69 0.365645
Target:  5'- cCCGCGGGCCccGCGCGgcGGCG-GGCc- -3'
miRNA:   3'- -GGCGUCCGGu-CGCGCa-CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 2551 0.67 0.493222
Target:  5'- gCCGCGGcGCUgggcgcgGGCGUGUGGUacuccccggGCGGCa- -3'
miRNA:   3'- -GGCGUC-CGG-------UCGCGCACCG---------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 2596 0.7 0.342849
Target:  5'- gCGCAGGUagCAGCGCaugaagGGCGcCAGCUu -3'
miRNA:   3'- gGCGUCCG--GUCGCGca----CCGC-GUCGAc -5'
23561 3' -62.9 NC_005261.1 + 2784 0.67 0.522324
Target:  5'- cCCGCAGcGCCcGCGCcgccUGG-GCGGCg- -3'
miRNA:   3'- -GGCGUC-CGGuCGCGc---ACCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 3429 0.73 0.212253
Target:  5'- gCGCGGGCCAGCGUccaGgcgGGCGC-GCg- -3'
miRNA:   3'- gGCGUCCGGUCGCG---Ca--CCGCGuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.