miRNA display CGI


Results 21 - 40 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 36652 0.66 0.579355
Target:  5'- gCGCgggcuugGGGCCAGgGuCGaacgcuggGGCGguGCUGa -3'
miRNA:   3'- gGCG-------UCCGGUCgC-GCa-------CCGCguCGAC- -5'
23561 3' -62.9 NC_005261.1 + 101855 0.66 0.577395
Target:  5'- cCCGCcGGCCGccugcagcacguccGCGCGcagGGCGCccAGCc- -3'
miRNA:   3'- -GGCGuCCGGU--------------CGCGCa--CCGCG--UCGac -5'
23561 3' -62.9 NC_005261.1 + 45464 0.66 0.574458
Target:  5'- gCC-CGGGCUcggcccgguccgagcGGCGCGggcGGCGCucGCUGu -3'
miRNA:   3'- -GGcGUCCGG---------------UCGCGCa--CCGCGu-CGAC- -5'
23561 3' -62.9 NC_005261.1 + 131194 0.66 0.570547
Target:  5'- cCCGCGGcgcggucgccGCCGGCGCGcccgcguacgUGGcCGCgcgcaucgaGGCUGa -3'
miRNA:   3'- -GGCGUC----------CGGUCGCGC----------ACC-GCG---------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 62227 0.66 0.570547
Target:  5'- gCGCGGcGCCAGgGCGUccaGCGCgagGGCg- -3'
miRNA:   3'- gGCGUC-CGGUCgCGCAc--CGCG---UCGac -5'
23561 3' -62.9 NC_005261.1 + 62932 0.66 0.570547
Target:  5'- aCGguGGCgCGGUGCGcgaGGUGCAgGCa- -3'
miRNA:   3'- gGCguCCG-GUCGCGCa--CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 127319 0.66 0.570547
Target:  5'- gUCGC-GGCCGGCG-GcGGCGCuGCc- -3'
miRNA:   3'- -GGCGuCCGGUCGCgCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 63725 0.66 0.570547
Target:  5'- uCCGUgagcGGCguGCGCaUGGCcGCGGCg- -3'
miRNA:   3'- -GGCGu---CCGguCGCGcACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 14802 0.66 0.570547
Target:  5'- cCCGCAGGCU-GCGCacgucCGCGGCUu -3'
miRNA:   3'- -GGCGUCCGGuCGCGcacc-GCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 33552 0.66 0.570547
Target:  5'- gCGguGGCCcaGGCGC-UGcCGCAGCa- -3'
miRNA:   3'- gGCguCCGG--UCGCGcACcGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 59722 0.66 0.570547
Target:  5'- cCCGCcGGgCGGCaGCGgcgGcGCGCGGCc- -3'
miRNA:   3'- -GGCGuCCgGUCG-CGCa--C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 104469 0.66 0.570547
Target:  5'- gCCGCGGGCCc-CGCGagcgGGCcCGGCc- -3'
miRNA:   3'- -GGCGUCCGGucGCGCa---CCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 46673 0.66 0.570547
Target:  5'- gUGUugagGGGCaCGGCGCG-GGCGCGcGCg- -3'
miRNA:   3'- gGCG----UCCG-GUCGCGCaCCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 84552 0.66 0.570547
Target:  5'- aCGCGGGcCCAGCGCcUGGaGCAcgGCc- -3'
miRNA:   3'- gGCGUCC-GGUCGCGcACCgCGU--CGac -5'
23561 3' -62.9 NC_005261.1 + 107255 0.66 0.570547
Target:  5'- cCCGCGGGC--GCGCGggcacgggcgGGCGC-GCa- -3'
miRNA:   3'- -GGCGUCCGguCGCGCa---------CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 124079 0.66 0.570547
Target:  5'- aCUGCAGcCCGGCGCcc-GCGUAGCg- -3'
miRNA:   3'- -GGCGUCcGGUCGCGcacCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 29737 0.66 0.570547
Target:  5'- gCCGCGGG-UAGCGuCGcGGCGC-GCg- -3'
miRNA:   3'- -GGCGUCCgGUCGC-GCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 4391 0.66 0.570547
Target:  5'- gCGCcGGCCacGGCGCGcacgcggccGCGCAGCg- -3'
miRNA:   3'- gGCGuCCGG--UCGCGCac-------CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 63776 0.66 0.570547
Target:  5'- aCGCcgAGGuCCAcGUGCGc-GCGCGGCUGc -3'
miRNA:   3'- gGCG--UCC-GGU-CGCGCacCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 128807 0.66 0.570547
Target:  5'- cCCGCggcgGGGCUcGCGC-UGcggcugacgcucGCGCGGCUGg -3'
miRNA:   3'- -GGCG----UCCGGuCGCGcAC------------CGCGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.