Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23561 | 5' | -59.8 | NC_005261.1 | + | 102489 | 0.66 | 0.699361 |
Target: 5'- uUCGcGGcUGGCUUCgGCCCagguGGCCUCGg -3' miRNA: 3'- gAGU-UC-ACCGAGGgCGGG----UCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 78081 | 0.66 | 0.668966 |
Target: 5'- -cCAGGcgcUGGCcCCCGCgCCGGCC-CAGg -3' miRNA: 3'- gaGUUC---ACCGaGGGCG-GGUCGGaGUU- -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 95110 | 0.66 | 0.648538 |
Target: 5'- -cCGAG-GGCUCCU-CCCggAGCCUCAu -3' miRNA: 3'- gaGUUCaCCGAGGGcGGG--UCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 13530 | 0.67 | 0.6383 |
Target: 5'- uUUAcGUacGCcCCUGCCCAGCCUCAGg -3' miRNA: 3'- gAGUuCAc-CGaGGGCGGGUCGGAGUU- -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 20943 | 0.67 | 0.617818 |
Target: 5'- gCUCGAG-GGCgggCUCGCgCCAGgCUCGc -3' miRNA: 3'- -GAGUUCaCCGa--GGGCG-GGUCgGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 121256 | 0.67 | 0.588212 |
Target: 5'- aCUCGGGguccgccgcagacggGGCggCCGcCCCGGCCUCGc -3' miRNA: 3'- -GAGUUCa--------------CCGagGGC-GGGUCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 101679 | 0.67 | 0.587194 |
Target: 5'- gCUCGGcuaGGCUcgcCCCGCCCuGCCUUAu -3' miRNA: 3'- -GAGUUca-CCGA---GGGCGGGuCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 119102 | 0.68 | 0.577042 |
Target: 5'- -cCGAG-GaGUUCCCGCCUAGCCcCAc -3' miRNA: 3'- gaGUUCaC-CGAGGGCGGGUCGGaGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 14818 | 0.68 | 0.56693 |
Target: 5'- ----cGUGGCgagCCCGCCCcuGGCCggCAAg -3' miRNA: 3'- gaguuCACCGa--GGGCGGG--UCGGa-GUU- -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 102439 | 0.68 | 0.556862 |
Target: 5'- cCUCcuc-GGCgCgCCGCCCGGCCUCGg -3' miRNA: 3'- -GAGuucaCCGaG-GGCGGGUCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 121580 | 0.68 | 0.546847 |
Target: 5'- -aCGAGgccucGCUCUCGCCCucGGCCUCGu -3' miRNA: 3'- gaGUUCac---CGAGGGCGGG--UCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 121866 | 0.68 | 0.526997 |
Target: 5'- ------cGGCUCCCGCCgAGCCgCAu -3' miRNA: 3'- gaguucaCCGAGGGCGGgUCGGaGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 84887 | 0.68 | 0.525027 |
Target: 5'- --gAGGUGGCUggcggcgaaggugCCCGCCCAcaccuccgggcggGCCUCGg -3' miRNA: 3'- gagUUCACCGA-------------GGGCGGGU-------------CGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 38083 | 0.69 | 0.476774 |
Target: 5'- uUCAGcGUgaaccgcGGCguuccgaUCCCGCCCAGCCUCc- -3' miRNA: 3'- gAGUU-CA-------CCG-------AGGGCGGGUCGGAGuu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 43990 | 0.69 | 0.469255 |
Target: 5'- uCUCGGacGUGGacacCUCCCaGCCCGGCUUCGg -3' miRNA: 3'- -GAGUU--CACC----GAGGG-CGGGUCGGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 4835 | 0.69 | 0.469255 |
Target: 5'- -gCAGGcGGCggcgUCCgCGCCgCAGCCUCAAg -3' miRNA: 3'- gaGUUCaCCG----AGG-GCGG-GUCGGAGUU- -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 109352 | 0.69 | 0.469255 |
Target: 5'- -gCAGGcGGCggcgUCCgCGCCgCAGCCUCAAg -3' miRNA: 3'- gaGUUCaCCG----AGG-GCGG-GUCGGAGUU- -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 93242 | 0.7 | 0.450728 |
Target: 5'- aUCGAgcaccuGUGGCggCCCGCCCGGgcCCUCGc -3' miRNA: 3'- gAGUU------CACCGa-GGGCGGGUC--GGAGUu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 124871 | 0.7 | 0.441616 |
Target: 5'- -aCGAGcGGUg-CCGCCCAGCCUCc- -3' miRNA: 3'- gaGUUCaCCGagGGCGGGUCGGAGuu -5' |
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23561 | 5' | -59.8 | NC_005261.1 | + | 35342 | 0.7 | 0.423711 |
Target: 5'- -cCAGGggcgcggGGCUCCCGCCCGaguucGCCUUc- -3' miRNA: 3'- gaGUUCa------CCGAGGGCGGGU-----CGGAGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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