miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 5' -59.8 NC_005261.1 + 102489 0.66 0.699361
Target:  5'- uUCGcGGcUGGCUUCgGCCCagguGGCCUCGg -3'
miRNA:   3'- gAGU-UC-ACCGAGGgCGGG----UCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 78081 0.66 0.668966
Target:  5'- -cCAGGcgcUGGCcCCCGCgCCGGCC-CAGg -3'
miRNA:   3'- gaGUUC---ACCGaGGGCG-GGUCGGaGUU- -5'
23561 5' -59.8 NC_005261.1 + 95110 0.66 0.648538
Target:  5'- -cCGAG-GGCUCCU-CCCggAGCCUCAu -3'
miRNA:   3'- gaGUUCaCCGAGGGcGGG--UCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 13530 0.67 0.6383
Target:  5'- uUUAcGUacGCcCCUGCCCAGCCUCAGg -3'
miRNA:   3'- gAGUuCAc-CGaGGGCGGGUCGGAGUU- -5'
23561 5' -59.8 NC_005261.1 + 20943 0.67 0.617818
Target:  5'- gCUCGAG-GGCgggCUCGCgCCAGgCUCGc -3'
miRNA:   3'- -GAGUUCaCCGa--GGGCG-GGUCgGAGUu -5'
23561 5' -59.8 NC_005261.1 + 121256 0.67 0.588212
Target:  5'- aCUCGGGguccgccgcagacggGGCggCCGcCCCGGCCUCGc -3'
miRNA:   3'- -GAGUUCa--------------CCGagGGC-GGGUCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 101679 0.67 0.587194
Target:  5'- gCUCGGcuaGGCUcgcCCCGCCCuGCCUUAu -3'
miRNA:   3'- -GAGUUca-CCGA---GGGCGGGuCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 119102 0.68 0.577042
Target:  5'- -cCGAG-GaGUUCCCGCCUAGCCcCAc -3'
miRNA:   3'- gaGUUCaC-CGAGGGCGGGUCGGaGUu -5'
23561 5' -59.8 NC_005261.1 + 14818 0.68 0.56693
Target:  5'- ----cGUGGCgagCCCGCCCcuGGCCggCAAg -3'
miRNA:   3'- gaguuCACCGa--GGGCGGG--UCGGa-GUU- -5'
23561 5' -59.8 NC_005261.1 + 102439 0.68 0.556862
Target:  5'- cCUCcuc-GGCgCgCCGCCCGGCCUCGg -3'
miRNA:   3'- -GAGuucaCCGaG-GGCGGGUCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 121580 0.68 0.546847
Target:  5'- -aCGAGgccucGCUCUCGCCCucGGCCUCGu -3'
miRNA:   3'- gaGUUCac---CGAGGGCGGG--UCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 121866 0.68 0.526997
Target:  5'- ------cGGCUCCCGCCgAGCCgCAu -3'
miRNA:   3'- gaguucaCCGAGGGCGGgUCGGaGUu -5'
23561 5' -59.8 NC_005261.1 + 84887 0.68 0.525027
Target:  5'- --gAGGUGGCUggcggcgaaggugCCCGCCCAcaccuccgggcggGCCUCGg -3'
miRNA:   3'- gagUUCACCGA-------------GGGCGGGU-------------CGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 38083 0.69 0.476774
Target:  5'- uUCAGcGUgaaccgcGGCguuccgaUCCCGCCCAGCCUCc- -3'
miRNA:   3'- gAGUU-CA-------CCG-------AGGGCGGGUCGGAGuu -5'
23561 5' -59.8 NC_005261.1 + 43990 0.69 0.469255
Target:  5'- uCUCGGacGUGGacacCUCCCaGCCCGGCUUCGg -3'
miRNA:   3'- -GAGUU--CACC----GAGGG-CGGGUCGGAGUu -5'
23561 5' -59.8 NC_005261.1 + 109352 0.69 0.469255
Target:  5'- -gCAGGcGGCggcgUCCgCGCCgCAGCCUCAAg -3'
miRNA:   3'- gaGUUCaCCG----AGG-GCGG-GUCGGAGUU- -5'
23561 5' -59.8 NC_005261.1 + 4835 0.69 0.469255
Target:  5'- -gCAGGcGGCggcgUCCgCGCCgCAGCCUCAAg -3'
miRNA:   3'- gaGUUCaCCG----AGG-GCGG-GUCGGAGUU- -5'
23561 5' -59.8 NC_005261.1 + 93242 0.7 0.450728
Target:  5'- aUCGAgcaccuGUGGCggCCCGCCCGGgcCCUCGc -3'
miRNA:   3'- gAGUU------CACCGa-GGGCGGGUC--GGAGUu -5'
23561 5' -59.8 NC_005261.1 + 124871 0.7 0.441616
Target:  5'- -aCGAGcGGUg-CCGCCCAGCCUCc- -3'
miRNA:   3'- gaGUUCaCCGagGGCGGGUCGGAGuu -5'
23561 5' -59.8 NC_005261.1 + 35342 0.7 0.423711
Target:  5'- -cCAGGggcgcggGGCUCCCGCCCGaguucGCCUUc- -3'
miRNA:   3'- gaGUUCa------CCGAGGGCGGGU-----CGGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.