miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 69750 0.69 0.981598
Target:  5'- aGGAGGAggcgaGCGCGggggGCGGC-GCCgGg -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa---CGCCGaCGGgC- -5'
23562 5' -49.5 NC_005261.1 + 46744 0.69 0.981598
Target:  5'- -------gUGCACGUGCcGCaGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCACGcCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 98091 0.69 0.979357
Target:  5'- uGGAGAAUcuggggGCGCGgcggGCGGCgagGCUgGg -3'
miRNA:   3'- -CCUUUUAaa----UGUGCa---CGCCGa--CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 14795 0.69 0.981598
Target:  5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3'
miRNA:   3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50087 0.69 0.97692
Target:  5'- --cAGAUgacCACGUGCacGCUGCCCGc -3'
miRNA:   3'- ccuUUUAaauGUGCACGc-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 64773 0.69 0.974278
Target:  5'- aGGggGGgcgcgcggACGCGgacGCGGCcgGCCUGg -3'
miRNA:   3'- -CCuuUUaaa-----UGUGCa--CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 95551 0.69 0.981598
Target:  5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67176 0.69 0.981598
Target:  5'- --------cGCGCG-GCGGCUgGCCCa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5'
23562 5' -49.5 NC_005261.1 + 41273 0.69 0.981598
Target:  5'- --------cGCGCccgGCGGCUGCCCc -3'
miRNA:   3'- ccuuuuaaaUGUGca-CGCCGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 94208 0.69 0.979357
Target:  5'- --------cGCGCG-GCGGCcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 73246 0.69 0.979357
Target:  5'- uGGAGcaccUGCACGcgcUGCGGCgGCUCGu -3'
miRNA:   3'- -CCUUuuaaAUGUGC---ACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 60405 0.69 0.979357
Target:  5'- aGGggGGgcgguggUGCugGgGCGGCaGCUCGg -3'
miRNA:   3'- -CCuuUUaa-----AUGugCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 33095 0.69 0.97692
Target:  5'- cGAGGAccUGCGCGcGcCGGCgGCCCGc -3'
miRNA:   3'- cCUUUUaaAUGUGCaC-GCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127243 0.69 0.976149
Target:  5'- cGGAGGAccagcgccagucggGCGCGgggcgGCGGCgGCCCa -3'
miRNA:   3'- -CCUUUUaaa-----------UGUGCa----CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 55540 0.69 0.974278
Target:  5'- uGGGGA----GCGCG-GCGGUggcGCCCGa -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 22726 0.69 0.976149
Target:  5'- cGGAGGAccagcgccagucggGCGCGgggcgGCGGCgGCCCa -3'
miRNA:   3'- -CCUUUUaaa-----------UGUGCa----CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 127472 0.69 0.978886
Target:  5'- cGGggGGUcagagucccagACGCuG-GCGGCUGCCUGc -3'
miRNA:   3'- -CCuuUUAaa---------UGUG-CaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67394 0.7 0.968346
Target:  5'- uGGAGGAggcgUACGCGcGCgccGGCgcGCCCGg -3'
miRNA:   3'- -CCUUUUaa--AUGUGCaCG---CCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 80930 0.7 0.965041
Target:  5'- uGGAcGAgg-ACGuCGcGCGGCUGCUCGc -3'
miRNA:   3'- -CCUuUUaaaUGU-GCaCGCCGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.