Results 141 - 147 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 85324 | 0.73 | 0.862387 |
|
Target: 5'- cGGAAcGUgacgucGCGCGUGUGGCUauuuaacgaGCCCGc -3' miRNA: 3'- -CCUUuUAaa----UGUGCACGCCGA---------CGGGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 102665 | 0.74 | 0.828781 |
|
Target: 5'- uGGAGGAUa-GCGCG-GCGGCUGCugCCGc -3' miRNA: 3'- -CCUUUUAaaUGUGCaCGCCGACG--GGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 32689 | 0.76 | 0.742617 |
|
Target: 5'- --------cGCGCGUGCGGCcaGCCCGa -3' miRNA: 3'- ccuuuuaaaUGUGCACGCCGa-CGGGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 1963 | 0.77 | 0.679926 |
|
Target: 5'- -------gUACACGUGCGcCUGCCCGa -3' miRNA: 3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 106480 | 0.77 | 0.679926 |
|
Target: 5'- -------gUACACGUGCGcCUGCCCGa -3' miRNA: 3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 57916 | 0.79 | 0.572962 |
|
Target: 5'- cGGAAGAcggcccGCACGcGCGuGCUGCCCGg -3' miRNA: 3'- -CCUUUUaaa---UGUGCaCGC-CGACGGGC- -5' |
|||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 129006 | 1.12 | 0.007951 |
|
Target: 5'- gGGAAAAUUUACACGUGCGGCUGCCCGu -3' miRNA: 3'- -CCUUUUAAAUGUGCACGCCGACGGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home