Results 141 - 147 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 136292 | 0.66 | 0.997949 |
Target: 5'- -------cUGCGCGccGCGGUgcUGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 18378 | 0.66 | 0.997949 |
Target: 5'- aGGGAGc---GCACGgucagggGCaGGCUGCCgGg -3' miRNA: 3'- -CCUUUuaaaUGUGCa------CG-CCGACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 57700 | 0.66 | 0.997949 |
Target: 5'- --------aGCACGUGaCGGUgGCCUGg -3' miRNA: 3'- ccuuuuaaaUGUGCAC-GCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 80587 | 0.66 | 0.997949 |
Target: 5'- cGGggGcg-UGCuCGgGCGGCUGCUg- -3' miRNA: 3'- -CCuuUuaaAUGuGCaCGCCGACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 111713 | 0.66 | 0.997949 |
Target: 5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3' miRNA: 3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31775 | 0.66 | 0.997949 |
Target: 5'- -------cUGCGCGccGCGGUgcUGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31893 | 0.66 | 0.997949 |
Target: 5'- cGGggGcgg-ACGCG-GCGGCgggGCCg- -3' miRNA: 3'- -CCuuUuaaaUGUGCaCGCCGa--CGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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