Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 82965 | 0.68 | 0.988779 |
Target: 5'- cGGAAGAcguggUGCGCGUcgagcacggagGCGGCcGCCUc -3' miRNA: 3'- -CCUUUUaa---AUGUGCA-----------CGCCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 84097 | 0.66 | 0.997549 |
Target: 5'- ---------cCGCGUGCGGCgUGCCg- -3' miRNA: 3'- ccuuuuaaauGUGCACGCCG-ACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 85324 | 0.73 | 0.862387 |
Target: 5'- cGGAAcGUgacgucGCGCGUGUGGCUauuuaacgaGCCCGc -3' miRNA: 3'- -CCUUuUAaa----UGUGCACGCCGA---------CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 88209 | 0.66 | 0.995944 |
Target: 5'- --------cGCGCG-GCGGCUgggcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGA----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 89190 | 0.67 | 0.994457 |
Target: 5'- -------gUGCuCG-GCGGCUGCCUGc -3' miRNA: 3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 90190 | 0.67 | 0.995247 |
Target: 5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3' miRNA: 3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 90595 | 0.67 | 0.991432 |
Target: 5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3' miRNA: 3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 90821 | 0.7 | 0.957721 |
Target: 5'- cGGGAGuaccgcgugUGCACGggggGCGGCgccGCCCc -3' miRNA: 3'- -CCUUUuaa------AUGUGCa---CGCCGa--CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 94208 | 0.69 | 0.979357 |
Target: 5'- --------cGCGCG-GCGGCcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 95159 | 0.66 | 0.997549 |
Target: 5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3' miRNA: 3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 95551 | 0.69 | 0.981598 |
Target: 5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3' miRNA: 3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 95935 | 0.68 | 0.986737 |
Target: 5'- uGGGAGGUgcugggcgacaucuCGCG-GCGGCUGCUgGg -3' miRNA: 3'- -CCUUUUAaau-----------GUGCaCGCCGACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 97961 | 0.66 | 0.997549 |
Target: 5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3' miRNA: 3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 98091 | 0.69 | 0.979357 |
Target: 5'- uGGAGAAUcuggggGCGCGgcggGCGGCgagGCUgGg -3' miRNA: 3'- -CCUUUUAaa----UGUGCa---CGCCGa--CGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 98612 | 0.68 | 0.988779 |
Target: 5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3' miRNA: 3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 99034 | 0.67 | 0.994457 |
Target: 5'- -------cUAC-CgGUGCGGCUGCUCGc -3' miRNA: 3'- ccuuuuaaAUGuG-CACGCCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 100810 | 0.73 | 0.87785 |
Target: 5'- cGGAAGG---GCGCGUGCGcCUGCgCCGc -3' miRNA: 3'- -CCUUUUaaaUGUGCACGCcGACG-GGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 102665 | 0.74 | 0.828781 |
Target: 5'- uGGAGGAUa-GCGCG-GCGGCUGCugCCGc -3' miRNA: 3'- -CCUUUUAaaUGUGCaCGCCGACG--GGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 106026 | 0.67 | 0.995247 |
Target: 5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3' miRNA: 3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 106480 | 0.77 | 0.679926 |
Target: 5'- -------gUACACGUGCGcCUGCCCGa -3' miRNA: 3'- ccuuuuaaAUGUGCACGCcGACGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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