Results 141 - 147 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 135038 | 0.67 | 0.995247 |
Target: 5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3' miRNA: 3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 135907 | 0.7 | 0.960393 |
Target: 5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3' miRNA: 3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 135946 | 0.67 | 0.992559 |
Target: 5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3' miRNA: 3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 136292 | 0.66 | 0.997949 |
Target: 5'- -------cUGCGCGccGCGGUgcUGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 136885 | 0.66 | 0.997087 |
Target: 5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 137424 | 0.67 | 0.992559 |
Target: 5'- gGGAAGGggcGCGCGUgggggGCGGCgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGUGCA-----CGCCGaCGgGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 138116 | 0.72 | 0.904542 |
Target: 5'- aGGGGcggcgccgGCGCGgGCGGCgggGCCCGg -3' miRNA: 3'- -CCUUuuaaa---UGUGCaCGCCGa--CGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home