miRNA display CGI


Results 121 - 140 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 81970 0.66 0.997087
Target:  5'- --------aGCGCGguguucgGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 29415 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 95159 0.66 0.997549
Target:  5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3'
miRNA:   3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 78833 0.66 0.997549
Target:  5'- cGGGAGcugcggUACGcCG-GCGGC-GCCCGc -3'
miRNA:   3'- -CCUUUuaa---AUGU-GCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 7195 0.66 0.997949
Target:  5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5'
23562 5' -49.5 NC_005261.1 + 31775 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 118850 0.66 0.995944
Target:  5'- --------gGCGCGgaggGCGGCgcGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 135038 0.67 0.995247
Target:  5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3'
miRNA:   3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 31429 0.67 0.992559
Target:  5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3'
miRNA:   3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30325 0.67 0.992559
Target:  5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3'
miRNA:   3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50444 0.67 0.993564
Target:  5'- -------gUGCGCGUGaaGCUGCgCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCACgcCGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 129218 0.67 0.993564
Target:  5'- -------cUGCugGUGCGGC-GCCUc -3'
miRNA:   3'- ccuuuuaaAUGugCACGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 2808 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 11948 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 15163 0.67 0.994457
Target:  5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3'
miRNA:   3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68785 0.67 0.994457
Target:  5'- cGAAcuucgUGCAgGUGCGGCUcauCCCGc -3'
miRNA:   3'- cCUUuuaa-AUGUgCACGCCGAc--GGGC- -5'
23562 5' -49.5 NC_005261.1 + 45617 0.67 0.994943
Target:  5'- cGGcggcgcgGCGCGgcGCGGCggGCCCGc -3'
miRNA:   3'- -CCuuuuaaaUGUGCa-CGCCGa-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 90190 0.67 0.995247
Target:  5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3'
miRNA:   3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 106026 0.67 0.995247
Target:  5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3'
miRNA:   3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.